Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120844g00021 ATGTCTTTCGGTTCTACATCACCCTTTGACGCTATTTTTCAGAGCCCACCACCCCCATCCGATCCATCACCCCCGCCACCCTCTCAGGATTCCTCCTCCTCCTCAACACCCTCACCACCGCCGCCGCCACCGCCATCCCAAGATTCCTCTACTCCTGATAATAATAACCAATCTCCAGGATCATCATCCTCCGGCCAGGCGTTAGTACCTTCTCCTCCAGGATCCTCATCAAATGGCAGCAAATCAGGGTTTAAAGGCCTTGGAGGTCTCATCGGTAGAGATACCAAGCACATTGCAATATACGCTTCAATAGGAGTCGTCTTTATCATCATTATCGCCATTGTTTGCATAAGAAAAAGGTCAAAAAAAAAGAAGCAGCAGCAACACAAGATGTACTATTACGGTGGAGATTCATCCGATCAACAAAAGAGTAACTACTACTACAATAACAACAAGAACAACAACAATAATGGTGTGAAGAATCAAAGCTACTATGGAGGAGGTGGTGGTGGTCCAGGTCCAGCAAATCAAGAACATGTAGTGAGAATGCCAAACGGAATGATGGGAATAGGAATGGCAGGTCCACCAGGTCCTGGTCCTGCTTGGGGTGCAGCAGCGCCACCTCCTATGATGTCAAACAGCTCAGATTTGAGCTCGAATTTCTCAATGGGGCCTGTTCTGCCTCCTCCGTCGCCTGGTCTTGCATTAGGCCTCAAGGGCGGCGGCACCTTCACCTACGACGAACTGGCAATGGCAACGGGGAACTTCTCAGATGCAAACATGATTGGGCAAGGTGGATTCGGTTACGTGTACAAGGGAGTCTTCCCTAACGGTAAGATTGTGGCAGTTAAGACTCTTAAGGCTGGTAGTGGCCAGGGGCAGAGGGAGTTCCAGGCTGAGATTGAGATCATCAGCCGTGTTCATCATCGCCATCTTGTTTCACTTGTTGGTTACTGCATTGCTGGTGGCCAGAGAATGTTGGTGTATGAATTCATCCCTAATAATACCTTGGAATATCACCTTCATGCTAAGGGTCTCCCTACCATGGATTGGCCTACCAGAATGCGCATTGCTATTGGAGCTGCTAAGGGACTTGCTTATCTTCATGAAGATTGTCATCCTCGCATCATCCATCGTGACATCAAAGCTGCAAATGTCCTTCTTGATGATAGCTTCGAAGCAAAGGTGGCTGATTTTGGATTGGCTAAGTTGACCACAGATAATAACACTCATGTATCAACTCGTGTCATGGGAACATTCGGGTACTTAGCTCCTGAATATGCATCAAGCGGAAAATTGACAGAGAAGTCTGACGTGTTCTCATTCGGAGTGATGCTATTAGAAATCCTAAGTGGTAAACGCCCTGTGGATGTCTCTGGTGCCATGGATGATAGCTTAGTGGACTGGGCTCGACCACTACTGACACGTGGATTAGAAGAAGATGGCAACTTTGGAGAGTTGGTAGATCCATTTTTGGAAGGAAACTTCAACAAACAAGAAATGACAAGGATAGCAGCTTGCGCTGCTTCCAGCATCCGCCACTCTGCCAAGAAGCGTCCAAAAATGAGTCAGATTGTAAGGACTTTGGAAGGAGATGTGTCACTGGATGACTTGAAGAATACGGGTAAGGCAGGTGGAATTGGTGGTGTTAGTTTGAACCCTTCTGCATCTGGGTCTGGAGGAGGGAGCAACGACTATGACACAATGCAGTACAATGCTGATTTACAAAAGTTCAGAAAGGCTGTGTATTCATCAAGCCAGGAATACACAACAAGCAGCACCTCTAGTAGTGGTGAGAGGCCATAA 1806 0.4734 MSFGSTSPFDAIFQSPPPPSDPSPPPPSQDSSSSSTPSPPPPPPPSQDSSTPDNNNQSPGSSSSGQALVPSPPGSSSNGSKSGFKGLGGLIGRDTKHIAIYASIGVVFIIIIAIVCIRKRSKKKKQQQHKMYYYGGDSSDQQKSNYYYNNNKNNNNNGVKNQSYYGGGGGGPGPANQEHVVRMPNGMMGIGMAGPPGPGPAWGAAAPPPMMSNSSDLSSNFSMGPVLPPPSPGLALGLKGGGTFTYDELAMATGNFSDANMIGQGGFGYVYKGVFPNGKIVAVKTLKAGSGQGQREFQAEIEIISRVHHRHLVSLVGYCIAGGQRMLVYEFIPNNTLEYHLHAKGLPTMDWPTRMRIAIGAAKGLAYLHEDCHPRIIHRDIKAANVLLDDSFEAKVADFGLAKLTTDNNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLEILSGKRPVDVSGAMDDSLVDWARPLLTRGLEEDGNFGELVDPFLEGNFNKQEMTRIAACAASSIRHSAKKRPKMSQIVRTLEGDVSLDDLKNTGKAGGIGGVSLNPSASGSGGGSNDYDTMQYNADLQKFRKAVYSSSQEYTTSSTSSSGERP 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120844g00021 601 MobiDBLite consensus disorder prediction 50 81 - -
Stsc120844g00021 601 MobiDBLite consensus disorder prediction 143 179 - -
Stsc120844g00021 601 MobiDBLite consensus disorder prediction 1 81 - -
Stsc120844g00021 601 SMART serkin_6 256 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120844g00021 601 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 106 584 IPR047117 -
Stsc120844g00021 601 MobiDBLite consensus disorder prediction 12 49 - -
Stsc120844g00021 601 MobiDBLite consensus disorder prediction 544 568 - -
Stsc120844g00021 601 FunFam Proline-rich receptor-like protein kinase PERK1 332 540 - -
Stsc120844g00021 601 ProSitePatterns Protein kinases ATP-binding region signature. 262 284 IPR017441 GO:0005524
Stsc120844g00021 601 Gene3D Transferase(Phosphotransferase) domain 1 332 541 - -
Stsc120844g00021 601 MobiDBLite consensus disorder prediction 552 568 - -
Stsc120844g00021 601 Gene3D Phosphorylase Kinase; domain 1 236 331 - -
Stsc120844g00021 601 FunFam Proline-rich receptor-like protein kinase PERK8 235 331 - -
Stsc120844g00021 601 MobiDBLite consensus disorder prediction 143 163 - -
Stsc120844g00021 601 ProSitePatterns Serine/Threonine protein kinases active-site signature. 376 388 IPR008271 GO:0004672|GO:0006468
Stsc120844g00021 601 SUPERFAMILY Protein kinase-like (PK-like) 241 529 IPR011009 -
Stsc120844g00021 601 ProSiteProfiles Protein kinase domain profile. 256 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120844g00021 601 Pfam Protein tyrosine and serine/threonine kinase 260 528 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120844g00021 Stsc-Chr120844 155694 158113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120844g00021 231 583 Trihelix Transcription Factor Family AT1G70460 58.192 1.59e-143 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Stsc120844g00021 PK_Tyr_Ser-Thr 3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120844g00021 - - gmx:100777163 588.186