Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120844g00020 ATGGCGACTACTGTGCAAGTGAAGGAAGAGGATTCTGTTGACTCTCCCACTTCCGTCCTTGAAGACGAGGATGCTTGTGGTATTAAAGATGAAGTTAAGTCTGAAGAAGCGCAGTGCGAGGAGGTCCCTGACCTCACTGAAACCCAGTTTAACAAGTTGGATGAGCTTTTAACCCAAACCAAGCTCTATTCCGAGTTTCTGCTGGAGAAAATGGACGACATCACACTTAATGTGGGTGAGCAAGAGAACGAGGCAGAAGAGAAGGTGGTTGGACGGGGACGGGCCTCTAAAAGGAAAGCAGCTTCCCAGTGCAATACTAGGAAAGCCAAAAGGGCAGTTGTTGCCATGCTTACAAGATCAAAAGAAAGTGTGAAGATAGAAGATATTAACATGACTGAGGAGGAAAGAACCGAGAAAGAACAAAAGGAGCTGATGCCTTTACTCACGGGTGGAAAACTGAAGTCTTATCAGCTTAAAGGTGTAAAGTGGTTGATTTCACTGTGGCAAAATGGGTTGAATGGGATTCTTGCTGATCAAATGGGTCTTGGGAAGACCATTCAAACAATTGGGTTTCTTTCACATCTAATAGGGAAAGGTCTGTATGGGCCATACATGATAATTGCTCCTCTAAGTACCCTCTCAAATTGGAAGAATGAGATTTCTAGGTTTGCACCATCACTTCCTGCAATTGTCTACCATGGCACCGGGCAAGAGAGAGATGAAATCCGACGGAAACATATGCCTAGAACCATTGGCTCCAAATTCCCCATAGTAATTACTTCCTATGAGATTGCTTTAAATGATGCTAGGAAACATTTAAGGCATTACCCTTGGAAGTATCTTGTAGTTGATGAGGGACACCGACTCAAAAACTCAAAGTGTAAATTGGTGAAGGAGTTGAAATGGATAAATGCACAAAACAGGCTACTTCTGTCAGGGACTCCTCTTCAGAATGACTTGGCCGAGCTATGGTCATTGTTGAACTTCATTTTACCCGATATTTTTGCTTCACTTGAAGAATTTAAGTCATGGTTTAATCTATCAGGAAATTGCAACAATGGAGCAACCAAGGAAGAATTAGAAGAGAATAGAAGAGGCCAAGTGGTGACCAAGCTTCATGCCATACTTCGGCCCTTTCTCTTGCGTAGAATGAAGGCTGATGTTGAGATCTCATTGCCAAGAAAGAAGGAGATCATTATTTATGCAACAATGACCGAGCATCAGAAGAATTTGCAGGATCATTTAGTTAACAAGACATTGGAGAACCATTTTGCAGAAAAGAAGTCAGTTGGACGTGGAATAAAGACGCTTAATAATTTGGTCATTCAACTTAGGAAAGTCTGTAATCATCCTGACCTATTAGAGTCTGCCTTTGATGATTCATATTTGTATCCTCCTGTGAATGAGATAGTTGCCCAATGTGGAAAATTTCGTTTGCTTGAACGGTTGTTGGAAAGGTTATTTGCAAGGGATCACAAAGTTTTGATATTCAGTCAGTGGACTAAAGTGTTAGACATAATGGATTACTATTTTAGTGAGAAGGGCTTTGAAGTCTGTAGGATTGATGGCAGTGTGAAATTGGATGAAAGGAAACGACAGATCCAAGAATTCAATGATGAAAACAGCAATTGCAGAATCTTCCTACTTTCTACTAGGGCTGGTGGACTAGGAATTAACCTCACTGCAGCTGACACATGCATCCTTTATGACAGTGATTGGAATCCTCAGGCAGACTTGCAGGCCATGGATAGATGTCATAGAATTGGTCAAACAAAACCAGTTCATGTTTACAGGCTCTCGACAGCCCAATCTGTTGAGGGTCGCATGCTGAAAAGAGCTTTTAGCAAGTTGAAACTCGAACATGTGGTGATCGAGAAAGGACAGTTTCATCAAGAGCGCACGAAGACGCTCAATGGGAACGAAATTGAGGAACAAGACATTTTGGCATTGCTTCAAGATGAGGATACAGCTGAAGATAAAATGATACAAACAGATATTAGTGATGAAGATTTGGATAAGCTGTTGAATCGCAGTGATCTTATTTCTCCAAATCAAAATGATGACGAGGAATTCAAACCACCATGCGATGCATTTCCTCTTAAAGGACCTGGGTGGGAGGTTGTAATTCCAACGGCAACTGGGGGCATGCTTTCTACTCTGAACAGTTAA 2169 0.4177 MATTVQVKEEDSVDSPTSVLEDEDACGIKDEVKSEEAQCEEVPDLTETQFNKLDELLTQTKLYSEFLLEKMDDITLNVGEQENEAEEKVVGRGRASKRKAASQCNTRKAKRAVVAMLTRSKESVKIEDINMTEEERTEKEQKELMPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLIGKGLYGPYMIIAPLSTLSNWKNEISRFAPSLPAIVYHGTGQERDEIRRKHMPRTIGSKFPIVITSYEIALNDARKHLRHYPWKYLVVDEGHRLKNSKCKLVKELKWINAQNRLLLSGTPLQNDLAELWSLLNFILPDIFASLEEFKSWFNLSGNCNNGATKEELEENRRGQVVTKLHAILRPFLLRRMKADVEISLPRKKEIIIYATMTEHQKNLQDHLVNKTLENHFAEKKSVGRGIKTLNNLVIQLRKVCNHPDLLESAFDDSYLYPPVNEIVAQCGKFRLLERLLERLFARDHKVLIFSQWTKVLDIMDYYFSEKGFEVCRIDGSVKLDERKRQIQEFNDENSNCRIFLLSTRAGGLGINLTAADTCILYDSDWNPQADLQAMDRCHRIGQTKPVHVYRLSTAQSVEGRMLKRAFSKLKLEHVVIEKGQFHQERTKTLNGNEIEEQDILALLQDEDTAEDKMIQTDISDEDLDKLLNRSDLISPNQNDDEEFKPPCDAFPLKGPGWEVVIPTATGGMLSTLNS 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120844g00020 722 CDD SF2_C_SNF 465 599 - -
Stsc120844g00020 722 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 385 687 IPR027417 -
Stsc120844g00020 722 Gene3D - 389 690 IPR027417 -
Stsc120844g00020 722 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 479 635 IPR001650 -
Stsc120844g00020 722 Gene3D - 118 382 IPR038718 -
Stsc120844g00020 722 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 127 383 IPR027417 -
Stsc120844g00020 722 FunFam Chromatin complex subunit A 106 393 620 - -
Stsc120844g00020 722 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 165 333 IPR014001 -
Stsc120844g00020 722 SMART helicmild6 505 589 IPR001650 -
Stsc120844g00020 722 MobiDBLite consensus disorder prediction 1 26 - -
Stsc120844g00020 722 FunFam ATP-dependent DNA helicase DDM1 147 392 - -
Stsc120844g00020 722 PANTHER SNF2/RAD54 HELICASE FAMILY 33 670 - -
Stsc120844g00020 722 Pfam SNF2-related domain 156 453 IPR000330 GO:0005524|GO:0140658
Stsc120844g00020 722 Pfam Helicase conserved C-terminal domain 479 589 IPR001650 -
Stsc120844g00020 722 SMART ultradead3 149 344 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120844g00020 Stsc-Chr120844 142968 147807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120844g00020 118 610 RAD5 or RAD16-like Gene Family AT1G02670 26.178 1.53e-42 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc120844g00020 SNF2_N 7.5e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120844g00020 K19001 - gmx:100777687 1152.12