Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120844g00011 ATGATGCATCATAGATGTTGCAGCAGTGGAAATACTCATCAGGGGCACCTCTGCACATGTGCAATGTTCCATGGCCAAGCTGCAACCAATTCATTCTCCATGCTATTCTCTATGCCCAACCACAACCACAACAACAACCCATACGATCAACCTGATGATGATATCATCTATTCATCATCCTCTTCTTCTTCCTCTGTGGACTGCACACTCTCCCTCGGAACCCCATCCACCCGTTTCACCCAAGACGAACACAACCGTACACGCCATGAACGCCGTTCCTCCGTCTCCAACTTCTGCTGGGATTTGCTACATTCCACCAAATCTCAAAGCAAGTCCTCCTCATCAAACCGTACCTCCAACAACAACAACACCGACCCTCTCGTTGCTCGCCGTTGCGCCAACTGTGACACCACTTCTACACCACTCTGGAGGAATGGCCCCCGTGGCCCTAAGTCTCTATGCAATGCCTGTGGCATACGGTACAAGAAAGAGGAGAGGAGGGCCAGCGCGGCAGCCGCCGCCTCTGGTGCCGTCATGGAGTCACCGCAGATTTACAACAGTAACTCATCATCGTGGTACCCGCATTCTCAGAGCCAGAAGATGGCCATGGGAGGGGAGTTCCGTTTCGTGGATGACGGTGACGTCCGGGAGTCCGAAAACGGCATTCCGTTCCTGTCATGGAGGATCAACGTTACTGACAGAACAAGCATGGTTCATGACTTCACAAGATGA 732 0.5219 MMHHRCCSSGNTHQGHLCTCAMFHGQAATNSFSMLFSMPNHNHNNNPYDQPDDDIIYSSSSSSSSVDCTLSLGTPSTRFTQDEHNRTRHERRSSVSNFCWDLLHSTKSQSKSSSSNRTSNNNNTDPLVARRCANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEERRASAAAAASGAVMESPQIYNSNSSSWYPHSQSQKMAMGGEFRFVDDGDVRESENGIPFLSWRINVTDRTSMVHDFTR 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120844g00011 243 ProSitePatterns GATA-type zinc finger domain. 132 157 IPR000679 GO:0006355|GO:0043565
Stsc120844g00011 243 PANTHER GATA TRANSCRIPTION FACTOR 18 11 243 IPR044272 GO:0003700|GO:0009908
Stsc120844g00011 243 ProSiteProfiles GATA-type zinc finger domain profile. 126 162 IPR000679 GO:0006355|GO:0043565
Stsc120844g00011 243 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 129 167 - -
Stsc120844g00011 243 CDD ZnF_GATA 131 163 IPR000679 GO:0006355|GO:0043565
Stsc120844g00011 243 Gene3D - 128 191 IPR013088 GO:0006355|GO:0008270
Stsc120844g00011 243 SMART GATA_3 126 177 IPR000679 GO:0006355|GO:0043565
Stsc120844g00011 243 MobiDBLite consensus disorder prediction 108 127 - -
Stsc120844g00011 243 Pfam GATA zinc finger 132 166 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120844g00011 Stsc-Chr120844 64203 65357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120844g00011 14 243 C2C2-Gata Transcription Factor Family AT3G50870 40.816 6.90e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Stsc120844g00011 GATA 6.8e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120844g00011 - - gmx:100790571 277.33