Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120844g00004 ATGGAAAGAAGAAGAGGGGAAGAAGAAGAAGAAGATAGGGAATTAGAGATGGCAACAGCAACAGCAACAGTAACAGCAGCAACAACCACTTTGGGTAGTTATAGTGTTGTTGTTCCAAACAATAATAGAGATGATTCTTCTTCAACTTCTTCAAAGTTATCTTCTCCAACTCTGGTTAGAGCTTCTGAAGAAAGAACTCGCCAACCATCACTACTCTTCCACCACCACCACCATCATCCTCCACTTCAACATCTCTATCCTCATCTAAGACCAACAACCACAGATCCAGATCTAACCTCCTCTCCTATTGCCACAACAGCACCACACCCGCCGCAGGCAGCTGCCACAACCACAACCACAACCATATCAGTGATAAGGTACAGAGAATGTTTGAGAAACCACGCAGCGAGCATGGGAAGCCATGTGGTAGATGGTTGTGGAGAGTTCATGCCAAGCGGAGAAGAAGGCACACCGGAATCACTCCGGTGCGCCGCCTGTGAGTGCCACCGTAACTTCCACCGCAGAGAGGTTGAAGGCTCCTCTCAACAGCACCACAGCTATTACCCCAAGCATAACGGTCACACCGCTCATCTTGTTCAGTTCCACACACCACCACCTTCATCTTCCCTTCATCATCAAAGATTCTCTCATGCTCCAGCGTCTGCTCAGCCGGTGATGATGGCGTTCGGAGGAGGAGGAGCTGCTGAGTCCTCGAGCGAAGATCTAAACATGTTTCATCATTCGAACGCATTAGGAGGACAATTCTCAGTGCAGCAAGCATCAGGCTCAAAGAAGAGGTTCAGAACAAAGTTCACACAGCAACAGAAAGATAGAATGATGGAGTTTGCTGAGAAGATTGGATGGAAGATTCAGAAACAAGATGAACAACAAGTGCAGCAGTTTTGTTCTCAGGCTGGTGTGAAGAGGCAAGTTTTCAAGGTTTGGATGCACAACAACAAGCAAGCTTCCAAGAAACAACAACACCAGCAGTAA 993 0.4733 MERRRGEEEEEDRELEMATATATVTAATTTLGSYSVVVPNNNRDDSSSTSSKLSSPTLVRASEERTRQPSLLFHHHHHHPPLQHLYPHLRPTTTDPDLTSSPIATTAPHPPQAAATTTTTTISVIRYRECLRNHAASMGSHVVDGCGEFMPSGEEGTPESLRCAACECHRNFHRREVEGSSQQHHSYYPKHNGHTAHLVQFHTPPPSSSLHHQRFSHAPASAQPVMMAFGGGGAAESSSEDLNMFHHSNALGGQFSVQQASGSKKRFRTKFTQQQKDRMMEFAEKIGWKIQKQDEQQVQQFCSQAGVKRQVFKVWMHNNKQASKKQQHQQ 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120844g00004 330 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 127 176 IPR006456 -
Stsc120844g00004 330 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 126 177 IPR006456 -
Stsc120844g00004 330 MobiDBLite consensus disorder prediction 1 66 - -
Stsc120844g00004 330 Pfam ZF-HD protein dimerisation region 125 177 IPR006456 -
Stsc120844g00004 330 SUPERFAMILY Homeodomain-like 258 325 IPR009057 -
Stsc120844g00004 330 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 115 321 - -
Stsc120844g00004 330 FunFam Zinc-finger homeodomain protein 2 253 325 - -
Stsc120844g00004 330 Gene3D - 253 325 - -
Stsc120844g00004 330 MobiDBLite consensus disorder prediction 21 64 - -
Stsc120844g00004 330 NCBIfam homeobox domain, ZF-HD class 264 321 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120844g00004 Stsc-Chr120844 36690 37682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120844g00004 100 326 ZF-HD Transcription Factor Family AT2G18350 51.489 3.19e-72 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Stsc120844g00004 ZF-HD_dimer 4.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120844g00004 - - vra:106776405 279.641