Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120843g00050 ATGATTCTAACACGCTCCTCCGCTTTGATGCTCCATCTCCACAATCCCCAAACTCCCTTCCAATTCTTCAACCACCATGCTCCCACCTTTCTTCTCCGCACCACCACCGCCGCCGCCACTTCTTCTCTCCTCAAAGCTCGCTTCTTTTCTCTCACCCCTCCACGCCGAACCACCGTAGCATCATCATCTACGCAAAGTTCAAAGGGTGGAGACACTTTCTTTGCTGAAGATAACGTTTCGTGGAGCTCACTTGGTCTCTCCGATACCCTTTCTCGTGCTCTCTCTAGCATTGGCCTCAATAGACCCTCTCTCGTCCAGGCTTCTTCAATTCCATCTGTGCTTTCTGGAAAGGATGTGATTATTGCAGCAGAGACTGGTAGTGGTAAAACATACAGTTATCTAGTTCCTCTATTTGATAAGCTAAGGGACATCCGTGATCATTCTCAACATGCTGTATCTGATCAAGAAGTTCCTCTGCCCCGAAAGAATGTTTTCCTCGTTCTTTGTCCAAATGTACAGCTTTGCGAGCAGGTAGTTAGGATGGCTAATAGTCTATGTGGAGACAATGGTGAACCAATTGTTAGTGTGGCAGCAGTTTGTGGCAGACAGGGATGGCCAATTCGTGAGCCTGATATAATTGTGACAACTCCTGCTGCCCTCCTGAATTATGTAGACACTGATAGAAGCCGTCGAATGGAATTTATGCGTGGTGTTAAATATGTATTTGATGAGGCTGATATGCTTCTTTGTGGGAGCTTCCAGAATAAAGTGATCCGCCTGCTAAACTTGCTTCGCTTTGATGAAAAGCTCTTGTCTCGTGCAAAAATATCTGCAGGAGATTTATCAGAGAAACCAGAATCTTCCGTGTCAGCGGATGATGCTTTGGAAGATGGAGAGGAACTTCCTCCTGAGGCCATGTCAGAAGAGGATGATGATACTCAGGACGATATTGTTGATACTAATAAAGAAGCTAACTCTGTTAAACAGAGAGACTGGAAGAGAGTCAGGAAAACTTATAAGCGCAGTAAACAGTATATTTTTGTTGCAGCTACACTTCCTGTGAATGGAAAGAAAACAGCTGGAGCAATGTTGAAACATATGTTTCCAGATGCTACATGGGTTAGTGGAAACTATCTTCATTGTCACAATCCAAGGTTGGAGCAAAGATGGGTTGAAGTTACGGTTGAGACGCAGGTGGATCAACTCATAAAGGCTGTGCGTCATCCCTTCAAGCCGGCTGATCTGGAGAATGCCAGTGGCATCCAGAGAACAATGGTATTTGCCAACACTGTTGAGGCTGTTGAAGCTGTGGCAAAGATATTGATCCGGTGTGGGATTGAGTGCTTACGCTATCATAAGAATTGCACATTGGAGGAGCGAGCGCAGGCCTTAGTTGAATTTGAAGAGAAAGGCGGTGTTCTTGTGTGTACTGATGCAGCTGCTCGTGGTGTGGATATTCCCAATGTCTTACATGTTATTCAGGCAGATTTTGCTACTTCTGCCGTAGAGTTTCTGCATAGGGTTGGTCGTACGGCTAGAGCTGGTCAATTTGGACTAGTTACCAGCATGTATACTGAATCCAACAAGGAGCTTGTTCGTGCAGTTCGTCGAGCTGGAGAACTTGCTCAACCTGTGGAGGCGGCATTTAGCAGGAAAAGAAGCTTTCGCAACAAACTCAAAAAGAGCGCAGGTGTTAGCAAAGTCAGAGATTCAGAAGCTATTAAAGAGAGTGTTGTAGCATGA 1743 0.455 MILTRSSALMLHLHNPQTPFQFFNHHAPTFLLRTTTAAATSSLLKARFFSLTPPRRTTVASSSTQSSKGGDTFFAEDNVSWSSLGLSDTLSRALSSIGLNRPSLVQASSIPSVLSGKDVIIAAETGSGKTYSYLVPLFDKLRDIRDHSQHAVSDQEVPLPRKNVFLVLCPNVQLCEQVVRMANSLCGDNGEPIVSVAAVCGRQGWPIREPDIIVTTPAALLNYVDTDRSRRMEFMRGVKYVFDEADMLLCGSFQNKVIRLLNLLRFDEKLLSRAKISAGDLSEKPESSVSADDALEDGEELPPEAMSEEDDDTQDDIVDTNKEANSVKQRDWKRVRKTYKRSKQYIFVAATLPVNGKKTAGAMLKHMFPDATWVSGNYLHCHNPRLEQRWVEVTVETQVDQLIKAVRHPFKPADLENASGIQRTMVFANTVEAVEAVAKILIRCGIECLRYHKNCTLEERAQALVEFEEKGGVLVCTDAAARGVDIPNVLHVIQADFATSAVEFLHRVGRTARAGQFGLVTSMYTESNKELVRAVRRAGELAQPVEAAFSRKRSFRNKLKKSAGVSKVRDSEAIKESVVA 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120843g00050 580 Pfam DEAD/DEAH box helicase 105 269 IPR011545 GO:0003676|GO:0005524
Stsc120843g00050 580 Pfam Helicase conserved C-terminal domain 421 515 IPR001650 -
Stsc120843g00050 580 MobiDBLite consensus disorder prediction 282 318 - -
Stsc120843g00050 580 CDD SF2_C_DEAD 386 524 - -
Stsc120843g00050 580 MobiDBLite consensus disorder prediction 292 317 - -
Stsc120843g00050 580 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 110 370 IPR014001 -
Stsc120843g00050 580 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 110 527 IPR027417 -
Stsc120843g00050 580 SMART ultradead3 98 389 IPR014001 -
Stsc120843g00050 580 Gene3D - 54 368 IPR027417 -
Stsc120843g00050 580 Gene3D - 387 580 IPR027417 -
Stsc120843g00050 580 CDD DEADc 90 271 - -
Stsc120843g00050 580 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 80 551 - -
Stsc120843g00050 580 SMART helicmild6 435 515 IPR001650 -
Stsc120843g00050 580 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 398 563 IPR001650 -
Stsc120843g00050 580 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 79 107 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120843g00050 Stsc-Chr120843 255409 259707 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120843g00050 329 541 Eukaryotic Initiation Factors Gene Family AT5G11200 27.459 8.98e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120843g00050 - - gmx:100789323 833.172