Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120843g00049 ATGGAGAGTGATGAGGGCGTGGTTTCAGGTGTGAGAATGGGAGACTCTTCCGAAGAGGTTCATGTCCTGGCCGTTGATGACAGCCTCGTCGATCGCAAGGTCATCGAGCGCTTGCTCAAAATCCTAGCTTGTAAAGTGACTGCTGTGGATAGTGGAGTCAGAGCACTGGAGTATCTCGGACTCGATCAATCTGACGCTTTTGTTGAGGGTTTGAAGGTGGATCTAATAATCACGGACTACTGCATGCCCGGGATGACCGGTTATGACCTCCTCAAGAAAATCAAGGAATCTTCCACGTTCAGAGAAATTCCGGTTGTGATTATGTCCTCTGAAAATATCTTGCCGCGCATAGACAGGTGTTTGGAGGAAGGTGCAGAGGATTTCATAGTGAAGCCGGTGAAGTTATCTGACGTGAAGCGTTTGAAGGATTACGGCGTTGGTGGCAGGATTATCAACAAGAGGAAGCTACCGGATAATACTCCTGAACCTCATCTCTCTTCATCACCACCGTCCGATTCATCATCGCCACTTTCATCTTCACCCTCCGTTTCTCCATCTCCGCCGGGTTTGGGACTTCCGGAATATCCGGAGGTTCCAAGGAAGAAGGCTGGGAGTTACTGTGTGAGAGATTGGAAACGTGCTCGTGAAGGATTGCCAAATAAGAATTTGGGAGTCTTTTGGAGCACAGCAATTAAGTAG 699 0.4864 MESDEGVVSGVRMGDSSEEVHVLAVDDSLVDRKVIERLLKILACKVTAVDSGVRALEYLGLDQSDAFVEGLKVDLIITDYCMPGMTGYDLLKKIKESSTFREIPVVIMSSENILPRIDRCLEEGAEDFIVKPVKLSDVKRLKDYGVGGRIINKRKLPDNTPEPHLSSSPPSDSSSPLSSSPSVSPSPPGLGLPEYPEVPRKKAGSYCVRDWKRAREGLPNKNLGVFWSTAIK 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120843g00049 232 PANTHER TWO-COMPONENT RESPONSE REGULATOR 20 147 IPR045279 GO:0009736
Stsc120843g00049 232 CDD REC_typeA_ARR 22 141 - -
Stsc120843g00049 232 ProSiteProfiles Response regulatory domain profile. 21 146 IPR001789 GO:0000160
Stsc120843g00049 232 SMART REC_2 20 142 IPR001789 GO:0000160
Stsc120843g00049 232 Gene3D - 20 169 - -
Stsc120843g00049 232 MobiDBLite consensus disorder prediction 161 180 - -
Stsc120843g00049 232 Pfam Response regulator receiver domain 22 138 IPR001789 GO:0000160
Stsc120843g00049 232 SUPERFAMILY CheY-like 20 140 IPR011006 -
Stsc120843g00049 232 MobiDBLite consensus disorder prediction 152 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120843g00049 Stsc-Chr120843 248083 250474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120843g00049 17 181 Response Regulator Gene Family AT1G59940 67.251 7.40e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc120843g00049 Response_reg 1.8e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120843g00049 K14492 - vvi:100263979 227.254