Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120843g00048 ATGGCTTTGAATAGGATTCTTCTACTGAGCCTTGTGGTGTTTTCTATTTGTTTTTTATTACCAAAATGCCATTCTCAAACCACTTCACCTCAAAACATTGAAACTTTCTATCCTAATGAAACTTCAGCTGAGCCCCCGAGAGAGGCTCAGCCTTCGCAGCAGCCACCGGTGGCTGCGCCTAGAAGTAGTAGCAGTTCATCATCAAATGGTAAGGTGGCTAAAGCTGTAGCTGCAACAGCTGCAAGCACCATAGTTGTTTGTGGATTACTCTTCTTTATAGTCCAAAGGTGCTTAAAGGGAAGAAAAAGAAAGGAGGAGGTAACAACCAATAACAACAATGCTCCGGTGGCGGCCGGGGACAAGCGTGTGGCTCCTCAAGGGAACACGTTTGAGAGAATTGAAGGGAATGTGAAGGGACTGATTGTTGATGAGGATGGTTTGGATGTGATTTATTGGAGAAAGCTTGAAGGGAAAAGATCCAATAAGGATCTTCTTCTTCATAAGGAGATTCTGAGAAACAAAGAAGAAGAAGATAATGATGATAATCATCTCAAGAAATCTAAATCCATTCAAGAAACTCCTCTTCTTAGAGGAAAATCTTCAGCTTCACACATGAACATAGTTCCAGAAATTGATGAGCCATATCAGATGACAAGAATTCCCTCTCCAAATCAATCAAACACTCCTCCTCCTCCTGCTTCTCCGTCGTCGCCGCCGCCCTCCGATTCTTTGCTAGCCATTCCAAAAGGGAATAGCCCTGCACCTCCACCTCCCCCTCCTCCAATTCCTGCAAGAAAATCATCATCAAAGAAAACACCACCTGAAATGGTAGTTAAGAGGATGAACTCTTCTGGAAAAGCTGCAGTGGAATCAAGCAGTGATAATGTGAAGCTGAAGCCTTTGCATTGGGATAAGGTTAATACTACTAATGCTGATCACTCCATGGTTTGGGACAATGTTGATCGAGGTTCATTCAGGGTTGATCAAGATCTTATGGAAGCTCTCTTTGGCTATGTTGCCAAGAACAGAAGATCTCCTAAGGGAAAGAATCCGAGCAACGATACGGCGGCAGGCTCCACCAGAATCTTCCTTCTAGACTCAAGAAAATCACAGAACATTGCAATTGTTGTGAAATCTCTGGCAATCTCAAGAGATGAAATCATTGATGCTGTCATTGATGGTAGAGGGCTTAATGCAGATACCCTTGAGAAGCTTGTTAGAATTGCTCCAACAGAAGAGGAGCAATCTCTTATCATGGAATACAAAGGAGACCCTGCAATTCTTGCTTCAGCTGAATCATTCTTGTTTCACATCCTTAAATCCGTTCCTTCGGCGTTTAAGTGCTTGAATGCCATGCTATTCAGGTTGAACTACACTTCTGAGATTCTAGAAATCAAGGAGTCTCTGCAGGTTCTTGAACTGGGGTGTAAGGAGCTTAAGAGCCAGAGAATCTTTGTGAAGCTTCTAGAAGCAGTGCTTAAGGCCGGAAATCGCATGAATGCTGGGACAGCCAGAGGTAATGCTCAAGCTTTCAATTTGGCTTCTCTGAGGAAGCTCTCTGATGTCAAAAGCACAGATGGAAAAACCACATTGCTTCATTTTGTGGTGGAAGAAGTAGTCCGGTCCGAAGGCAAGCGAATTGCTCTTAATAGTGGCGAAATCCATGAGAAGATTGCAGCTTCGGATGAACAAAGAGAAAGGGAATATATAACACTAGGATTGCCAATTGTGGGAGGGATCAGTTCTGAGTTTTCTAATGTCAAGAAAGCAGCAGTTATAGACTACAACACATTAGTTGGTTCAATCTCGGCACTCTCCACGCGGATCATCGAAATTCAAGAGCTTGTTTCCCAGTGTAGGGAAGGCGAAAGAGGCTATCTCGCGAAAGAGATGGATAATTTTGTTCAGAACTCTAAGGAGGAATTGAAATTTGTGAGGGAGGAGCAAGCAAGGGTAATGCAGGTTATCAAGAGAACAAGAGATTATTATCAAGGAGGAGCTTCAAGAGAGAGTGCAGAACAAAGTCTGCAACTGTTTGTGATAGTGAAGGATTTCATGGGGATGGTTGATCAAGCTTGTGTGGAGATTGCAAGAAATATGCAGAAAAGGAAGACACACAAGGCAGCTTCTTATGGCTAG 2139 0.4329 MALNRILLLSLVVFSICFLLPKCHSQTTSPQNIETFYPNETSAEPPREAQPSQQPPVAAPRSSSSSSSNGKVAKAVAATAASTIVVCGLLFFIVQRCLKGRKRKEEVTTNNNNAPVAAGDKRVAPQGNTFERIEGNVKGLIVDEDGLDVIYWRKLEGKRSNKDLLLHKEILRNKEEEDNDDNHLKKSKSIQETPLLRGKSSASHMNIVPEIDEPYQMTRIPSPNQSNTPPPPASPSSPPPSDSLLAIPKGNSPAPPPPPPPIPARKSSSKKTPPEMVVKRMNSSGKAAVESSSDNVKLKPLHWDKVNTTNADHSMVWDNVDRGSFRVDQDLMEALFGYVAKNRRSPKGKNPSNDTAAGSTRIFLLDSRKSQNIAIVVKSLAISRDEIIDAVIDGRGLNADTLEKLVRIAPTEEEQSLIMEYKGDPAILASAESFLFHILKSVPSAFKCLNAMLFRLNYTSEILEIKESLQVLELGCKELKSQRIFVKLLEAVLKAGNRMNAGTARGNAQAFNLASLRKLSDVKSTDGKTTLLHFVVEEVVRSEGKRIALNSGEIHEKIAASDEQREREYITLGLPIVGGISSEFSNVKKAAVIDYNTLVGSISALSTRIIEIQELVSQCREGERGYLAKEMDNFVQNSKEELKFVREEQARVMQVIKRTRDYYQGGASRESAEQSLQLFVIVKDFMGMVDQACVEIARNMQKRKTHKAASYG 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120843g00048 712 ProSiteProfiles Formin homology-2 (FH2) domain profile. 288 712 IPR015425 -
Stsc120843g00048 712 PANTHER FORMIN-RELATED 15 701 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Stsc120843g00048 712 SUPERFAMILY Formin homology 2 domain (FH2 domain) 253 706 - -
Stsc120843g00048 712 MobiDBLite consensus disorder prediction 55 69 - -
Stsc120843g00048 712 MobiDBLite consensus disorder prediction 176 192 - -
Stsc120843g00048 712 Gene3D Formin, FH2 domain 287 701 IPR042201 -
Stsc120843g00048 712 SMART it6_source 290 704 IPR015425 -
Stsc120843g00048 712 MobiDBLite consensus disorder prediction 224 242 - -
Stsc120843g00048 712 MobiDBLite consensus disorder prediction 176 294 - -
Stsc120843g00048 712 MobiDBLite consensus disorder prediction 31 69 - -
Stsc120843g00048 712 Pfam Formin Homology 2 Domain 295 689 IPR015425 -
Stsc120843g00048 712 MobiDBLite consensus disorder prediction 250 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120843g00048 Stsc-Chr120843 239144 241588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120843g00048 9 704 FH2 protein (formin) Gene Family AT1G70140 48.281 0.0 584
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120843g00048 - - adu:107481275 1055.05