Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120843g00044 ATGGCGGCAAGTGAAAATGAAGCTAAAGAATACATGGCACAAGTGCGACAATCATTATGTCCACATAGAAAACAAGACTATGATCGCCTTGTCAAAATTCTGGAATATCACACCCATAACATAAGGACTTTGACGGAGAGTGTTACAGAAAGATTAAAACAAATATTTCAAGGCCATAATCATCTCATTTTGGGATTTAATAAATTCTTGCCCTCTCACCATCAAATAGAGCTTCTATTGGAGCAGGATGAAGAACAATCTCCCAAGAAGCTCATTCCTGGATTTCGAGAAGCTATAAGCTTTTTCAAGAAAGTTGCGGGTCGATTTAAAGATGAAGGTCGTGATTTCAATTTTACCAAACTCTTTTTAGAGAAATCCAAATTGTGGACAGAGGGGAAAATATCTTGGACTGATCTTTATTATAAGATTGTTCCGCATTTAAGGGAACATGAAGATCTGGTTGAAGAGCTTGGTTTCTTTTTCCCTGAAATTTCAGAACCAAAAGAAGATTTTCCTACTTGGGGCCAAACAAGACGACCAAGATCATGA 549 0.3734 MAASENEAKEYMAQVRQSLCPHRKQDYDRLVKILEYHTHNIRTLTESVTERLKQIFQGHNHLILGFNKFLPSHHQIELLLEQDEEQSPKKLIPGFREAISFFKKVAGRFKDEGRDFNFTKLFLEKSKLWTEGKISWTDLYYKIVPHLREHEDLVEELGFFFPEISEPKEDFPTWGQTRRPRS 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120843g00044 182 ProSiteProfiles PAH domain profile. 1 73 IPR003822 GO:0006355
Stsc120843g00044 182 Pfam Paired amphipathic helix repeat 26 70 IPR003822 GO:0006355
Stsc120843g00044 182 ProSiteProfiles PAH domain profile. 87 164 IPR003822 GO:0006355
Stsc120843g00044 182 SUPERFAMILY PAH2 domain 5 72 IPR036600 GO:0006355
Stsc120843g00044 182 Gene3D Paired amphipathic helix 3 74 IPR036600 GO:0006355
Stsc120843g00044 182 PANTHER SIN3B-RELATED 6 166 IPR039774 GO:0003714
Stsc120843g00044 182 SUPERFAMILY PAH2 domain 94 162 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120843g00044 Stsc-Chr120843 210859 211748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120843g00044 4 83 WRKY Transcription Factor Family AT4G12020 32.500 7.36e-07 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc120843g00044 PAH 3.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120843g00044 - K11644 thj:104816731 82.8037