Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120843g00039 ATGCCGTCACATGCGGATCTGGACGTTCAGATCGAGCACCTGATGGAGTGCAAGCCTCTGTCGGAGGCGGAGGTGAAGGCGCTCTGCGATCAGGCGCGGACGGTTCTGGTTGAGGAGTGGAATGTGCAGCCGGTGAAGTGCCCTGTCACCGTCTGCGGCGACATTCACGGCCAGTTCTACGATCTAGTCGAGCTATTCCGCATAGGTGGCAATGCTCCTGATACCAATTACCTCTTCATGGGTGATTATGTAGATCGTGGATACTATTCTGTGGAGACTGTTACACTTCTGGTGGCCTTGAAAGTCCGCTACAGGGATAGAATTACGCTTACCAGGGGAAATCACGAGAGCCGTCAAATTACTCAAGTGTATGGCTTCTACGATGAATGCTTAAGAAAATATGGAAATGCCAATGTCTGGAAATACTTTACCGACTTGTTTGATTATTTACCTCTGACTGCCCTTATTGAGAGCCAGATTTTCTGCTTGCATGGAGGTCTCTCACCTTCTTTGGATACATTAGACAATATCAGGGCATTGGATCGTATACAAGAGGTTCCACATGAAGGACCAATGTGCAACCTCTTATGGTCTGATCCGGATGATCGCTGTGGGTGGGGAATATCTCCACGTGGTGCTGGCTATACATTTGGACAAGATATAGCTGCTCAGTTTAATCATACCAANNNNNNNNNNCATGGAAGGATACAATTGGTGTCAGGACAAGAATGTGGTGACTGTATTTAG 747 0.4712 MPSHADLDVQIEHLMECKPLSEAEVKALCDQARTVLVEEWNVQPVKCPVTVCGDIHGQFYDLVELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITLTRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALIESQIFCLHGGLSPSLDTLDNIRALDRIQEVPHEGPMCNLLWSDPDDRCGWGISPRGAGYTFGQDIAAQFNHTXXXXHGRIQLVSGQECGDCI 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120843g00039 248 PRINTS Serine/threonine phosphatase family signature 48 75 IPR006186 GO:0016787
Stsc120843g00039 248 PRINTS Serine/threonine phosphatase family signature 145 171 IPR006186 GO:0016787
Stsc120843g00039 248 PRINTS Serine/threonine phosphatase family signature 110 134 IPR006186 GO:0016787
Stsc120843g00039 248 PRINTS Serine/threonine phosphatase family signature 174 201 IPR006186 GO:0016787
Stsc120843g00039 248 PRINTS Serine/threonine phosphatase family signature 77 104 IPR006186 GO:0016787
Stsc120843g00039 248 SMART pp2a_7 20 242 IPR006186 GO:0016787
Stsc120843g00039 248 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 5 229 IPR047129 GO:0004722
Stsc120843g00039 248 CDD MPP_PP2A_PP4_PP6 6 228 - -
Stsc120843g00039 248 Gene3D - 2 242 IPR029052 -
Stsc120843g00039 248 Pfam Calcineurin-like phosphoesterase 48 225 IPR004843 GO:0016787
Stsc120843g00039 248 SUPERFAMILY Metallo-dependent phosphatases 6 228 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120843g00039 Stsc-Chr120843 188665 192696 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120843g00039 49 225 Calmodulin-binding Proteins AT5G63870 35.981 1.65e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120843g00039 K04382 - nnu:104596284 472.241