Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120843g00037 ATGATGAAGGGATTGGATGGGATTGATTCTCAACCAGGTTCCTCTTCCTCGCGATCGAGTTCCAAGATGCACCACCGAGCCACCTCTCAGACAATTCGACTCGGCCGAGTCCAGCCACAGGCACCTACCTACCGTACCATCTTCTGCAATGATCGTGAATCCGGTCTCCCCCTTCGGTTCAAGTTCAGACGGGTGGCTAATCTCTACTTTCTTTCAATCTCAATTTTGTCAACCACACCAATTAGTCCTGTCTCTCCAATTACTAATGTACTTCCTTTGTCCCTGGTGCTTCTCGCATCTCTTATTAAGGAAGCTTGGGAGGACTGGAAGCGCTTTCAAAATGACATGGCCATAAACAATAAAATGATAGAAGTTTTGCAAGATCAACAGTGGGTTTCTGTACCCTGGAAAAGCTTGCAGGTGGGAGACATTGTCAAGGTTAAGCAGGATGAATTCTTTCCAGCAGATCTGCTTTTCATGGCTAGTACAAATGCAGATGGTGTTTGCTACATTGAGACCGCTAATTTGGATGGGGAAACCAACTTGAAAATAAGAAAAGCATTGGAAAAGACTTGGGATTACCTGACTCCACAGAAAGCATCTGAGTTTAAAGGTGAAATTCAATGTGAACAACCAAACAATTCACTGTATACTTTTACTGGAAATCTTATATTGGACAATCAAACATTGCCTCTTAGTCCAAACCAAGTTTTGCTGCGAGGATGCAGTCTCAGAAATACAGAGTATATTGTTACAGTTGTTATTTTTACAGGACATGAAACAAAGGTGATGATGAATTCAATGAACGTTCCTTCCAAAAGAAGTACATTGGAGAGGAAGCTGGACAAGCTCATACTTGCTCTATTTGTAACTCTCTTTGTGATGTGCTTCATTGGAGCCACTGGCAGTGCTCTCTTCGTTGACAAGAAATATTATTACTTGCATCTTGATTCAGTTGAGGAGGGCTCTTCACAGTTTAACCCTAACAACAGATTTTTGGTTCTTATTCTGACTATGTTTACCCTTATCACGCTATACTCTTCAATCATCCCCATTTCTCTTTATGTCTCTATAGAGTCAGCTCAGTTTATCAACAAAGACTTGCACATGTACCATAGAGAAACCAATACACCTGCATTAGCTAGAACGTCAAATCTGAATGAAGAACTTGGGCAGGTGGAATACATTTTCTCCGACAAAACTGGGACTCTTACGAGAAACTTAATGGAGTTCTTCAAGTGTTCAATTGGTGGAGAGGTGTATGGACATGGTGTGACTGAAATTGAACGGGGAATAGCAGAGCGCAATGGCATGAAAGTTGAGGAGTATAAATCACCCAATGCAGTGCAAGAGAAAGGTTTTAATTTTGATGATACCAGGATTATGAGAGGAGCATGGAGGAATGAGTCTAATCCTGATATCTGCAAGGAGTTCTTCAGATGTCTTGCTATATGTCATACTGTACTTCCTGAGGGCGAAGAGTCCCCTGAAAAGATTAAGTATCAAGCTGCGTCTCCTGATGAGTCTGCTTTGGTTATTGCTGCAAAGAACTTTGGTTTCTTCTTCTACAGACGCACACCGACAACTATATATGTCCGTGAATCTCATGTTGAGAAGATCGGCCAAATTCAAGATGCATGTTATGAAATTTTAAATGTACTTGAGTTTAATAGTACAAGGAAGCGTCAGTCTGTTGTATGTCGTTATTCAGATGGGAGGCTTGTATTGTACTGCAAGGGTGCTGATACGGTAATCTATGAGAGACTGGCTGATGGTAATAATGAAATCAGGAACATAACAAGAGAGCATTTGGAACAATTTGGATCTGCCGGACTACGCACATTATGCCTGGCATACAAAGAATTGCATCCTGATGCTTATGAAAGCTGGAATGAGAAGTTTATCCAGGCCAAGTCTTCTCTACGTGATCGTGAGAAGAAATTAGATGAGGTTGCGGAACTCATTGAAAATGGTCTCACTTTAATTGGTTGCACTGCCATAGAAGACAAGCTTCAGGAGGGAGTACCAGGTTGCATAGCGACTCTTCAACGGGCTGGTATCAAAATATGGGTTCTTACAGGGGACAAGATTGAAACAGCAATAAACATAGCCTATGCATGCAATTTAATAAGCAATGAGATGAAGAAATTTATTATCAGTTCGGAAACTGATGCAATAAGAGAAGTTGAAGACAAGGGTGACCCAGTGGAAATTGCACGATTTATTAAAGATGAAGTTAAAAAAGAGCTAAAGAAATGCACTGAAGAAGCACGGAGCTATTATAACTCTGGATCTGCACCAAAATTAGCACTTGTAATTGACGGGAAGTGTCTAATGTATGCATTGGATCCAAGTTTAAGAGTGATGCTGTTGGATTTAGGTTTGAATTGTCATGCTGTCGTTTGCTGCCGAGTTTCTCCTTTACAGAAAGCACAGGTAACAAGTATGGTCAAGAAAGGTGCACGGAAAATAACACTAGGTATCGGTGATGGAGCCAATGATGTTAGCATGATTCAAGCTGCTCATGTTGGTGTTGGCATAAGTGGGATGGAAGGGATGCAAGCTGTGATGGCTATCCCTGTGGTCATTGTTGGTCTATTTGACAAGGATGTCAGTGCGTCTTTATCCAAGAAGTATCCTGAGCTATACAAGGAGGGCATAAAGAATGTCTACTTCAAATGGAGAGTTGTGGCTTTGTATGCCTTTTTTTCTATATACCAGTCTCTAATATTCTTCTATTTTGTTGGCACAACAACCCTGACTGCTAAGAACTTAGATGGAAAGATGTTTGGACTCTGGGATATCAGTACAATGGCCTTCACGTGTGTTGTAATAACCGTCAACTTGCGACTGCTTTTGATCTGTAATTCAATCACAAGATGGCACTATATTAGTGTCGGTGGGAGTATATTAGCCTGGTTTATCTTTGTTTTTATATACTCATCGATTTGTCATCTTTTTGGTCGCGAGAATATTTATTTTGTCATCTTTGTCTTGATGAGTACATTCTATTTCTACTTAATGCTACTACTTGTTCCGGTTGCTGCGCTCTTCTGTGACTTTGTTTACCAAGGGGTTCAAAGATGGTTCTTCCCCTATGATTATCAGGTCATTCAAGAAATGCACAAGAATGAGCTTAATGACACTGGAAGAGCAAAATTGCTGGAGGTAGGGAGCCAGCTTACGGAAGACCAAGCAAGGAGCTATGCTGTATCTCGGCTACCTCCCCAGATATCAAAGCACACCGGATTCGCTTTCGATTCGCCGGGGTACGAGTCATTCTTTGCTTCACAGATTGGTGTATATGCCCCTCCAAAGGCATGGGATGTTGCAAGACGAGCTAGCATGAAATCACGGCTAAAGATTGTTCTGCAAAAGTGA 3381 0.4141 MMKGLDGIDSQPGSSSSRSSSKMHHRATSQTIRLGRVQPQAPTYRTIFCNDRESGLPLRFKFRRVANLYFLSISILSTTPISPVSPITNVLPLSLVLLASLIKEAWEDWKRFQNDMAINNKMIEVLQDQQWVSVPWKSLQVGDIVKVKQDEFFPADLLFMASTNADGVCYIETANLDGETNLKIRKALEKTWDYLTPQKASEFKGEIQCEQPNNSLYTFTGNLILDNQTLPLSPNQVLLRGCSLRNTEYIVTVVIFTGHETKVMMNSMNVPSKRSTLERKLDKLILALFVTLFVMCFIGATGSALFVDKKYYYLHLDSVEEGSSQFNPNNRFLVLILTMFTLITLYSSIIPISLYVSIESAQFINKDLHMYHRETNTPALARTSNLNEELGQVEYIFSDKTGTLTRNLMEFFKCSIGGEVYGHGVTEIERGIAERNGMKVEEYKSPNAVQEKGFNFDDTRIMRGAWRNESNPDICKEFFRCLAICHTVLPEGEESPEKIKYQAASPDESALVIAAKNFGFFFYRRTPTTIYVRESHVEKIGQIQDACYEILNVLEFNSTRKRQSVVCRYSDGRLVLYCKGADTVIYERLADGNNEIRNITREHLEQFGSAGLRTLCLAYKELHPDAYESWNEKFIQAKSSLRDREKKLDEVAELIENGLTLIGCTAIEDKLQEGVPGCIATLQRAGIKIWVLTGDKIETAINIAYACNLISNEMKKFIISSETDAIREVEDKGDPVEIARFIKDEVKKELKKCTEEARSYYNSGSAPKLALVIDGKCLMYALDPSLRVMLLDLGLNCHAVVCCRVSPLQKAQVTSMVKKGARKITLGIGDGANDVSMIQAAHVGVGISGMEGMQAVMAIPVVIVGLFDKDVSASLSKKYPELYKEGIKNVYFKWRVVALYAFFSIYQSLIFFYFVGTTTLTAKNLDGKMFGLWDISTMAFTCVVITVNLRLLLICNSITRWHYISVGGSILAWFIFVFIYSSICHLFGRENIYFVIFVLMSTFYFYLMLLLVPVAALFCDFVYQGVQRWFFPYDYQVIQEMHKNELNDTGRAKLLEVGSQLTEDQARSYAVSRLPPQISKHTGFAFDSPGYESFFASQIGVYAPPKAWDVARRASMKSRLKIVLQK 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120843g00037 1126 Gene3D - 101 267 - -
Stsc120843g00037 1126 PRINTS P-type cation-transporting ATPase superfamily signature 397 411 - -
Stsc120843g00037 1126 PRINTS P-type cation-transporting ATPase superfamily signature 828 847 - -
Stsc120843g00037 1126 Gene3D - 526 661 IPR023299 GO:0000166
Stsc120843g00037 1126 MobiDBLite consensus disorder prediction 1 32 - -
Stsc120843g00037 1126 ProSitePatterns E1-E2 ATPases phosphorylation site. 399 405 IPR018303 -
Stsc120843g00037 1126 MobiDBLite consensus disorder prediction 9 32 - -
Stsc120843g00037 1126 SFLD p-type atpase 379 864 IPR044492 -
Stsc120843g00037 1126 SUPERFAMILY Calcium ATPase, transmembrane domain M 61 1032 IPR023298 -
Stsc120843g00037 1126 FunFam Phospholipid-transporting ATPase IC 394 406 - -
Stsc120843g00037 1126 FunFam Phospholipid-transporting ATPase 505 660 - -
Stsc120843g00037 1126 SUPERFAMILY Calcium ATPase, transduction domain A 120 264 IPR008250 -
Stsc120843g00037 1126 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 461 667 IPR023299 GO:0000166
Stsc120843g00037 1126 Coils Coil 743 763 - -
Stsc120843g00037 1126 FunFam Phospholipid-transporting ATPase 99 268 - -
Stsc120843g00037 1126 FunFam Phospholipid-transporting ATPase 661 865 - -
Stsc120843g00037 1126 NCBIfam phospholipid-translocating P-type ATPase 60 858 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Stsc120843g00037 1126 Pfam Phospholipid-translocating P-type ATPase C-terminal 858 1032 IPR032630 -
Stsc120843g00037 1126 SFLD C1.7: P-type atpase like 379 864 - -
Stsc120843g00037 1126 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 858 1068 - -
Stsc120843g00037 1126 Gene3D - 662 865 IPR023214 -
Stsc120843g00037 1126 Pfam Cation transport ATPase (P-type) 492 588 - -
Stsc120843g00037 1126 SUPERFAMILY HAD-like 385 857 IPR036412 -
Stsc120843g00037 1126 Pfam E1-E2 ATPase 121 311 - -
Stsc120843g00037 1126 NCBIfam HAD-IC family P-type ATPase 338 420 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120843g00037 Stsc-Chr120843 169254 182535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120843g00037 858 1122 Primary Pumps ATPases AT1G59820 65.789 2.71e-117 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120843g00037 K14802 - gmx:100815547 1796.56