Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120843g00035 ATGGATCCGGGTGCGATGATGAACGAGGGCTCGTTTGGGAATGGGGCAGGCAATACGGTGCCGTTTAGCTTGGCGGAGATCTGGCAGTTCCCGCAGGCTGTCAATGGTGCTGGAAGCGGCGCCTTAGGGCTCAGGAGGCCTCAGTTCGGGTTAGGCCAGTTTGGGGATTTCATTGCCGGTCCGAACCGGGAAACTGGACCGGTTGGTTCAGAACAAAGGGCGGCTAGTGGTGGCGGTGGTAGTAGGAAGAGGCGTGAATCAGAGGAGGAATCCCCTAAGGCCGTTTCCACCAGCAATGTTGCACCTAATGCCGCGAGTGATGGGGATGGAAAACGGCTTAAAGGAGGAGCTTCCGCGAGCCGAAATGAAAGCCGCGACGCCAAGGTTGAAGGAGCAGAAGCCAGTTCAGGAAAGCCTGCGGACCAAAATAATCAGGCACCACCTGACCCTCCTAAGCAAGATTACATCCATGCTAGAAGGGAAAAGATTAGTGAAAGGATGAAAATTCTTCAGGATTTGGTTCCTGGTTGTAATAAGGTTATTGGAAAGGCATTGGTCCTTGATGAGATAATTAATTATATCCAATCTCTTCAGCGTCAAGTTGAGTTTTTGTCAATGAAGCTTGAAGCAGTGAATTCAAGACTGAACACTGGCATTGAAGCCTTTCCTCCTAAAGATTTTGGTCAGCAAACATTTGATCCGGCTACCTTGCCATTTGGTTCTCAAGCTACTAGAGACTATAGCAGAGGTTCTTCCCCAGAGTGGTTACATATGCAGGTAGGAGGTGCGTTTGAAAGAACAACATAG 807 0.4981 MDPGAMMNEGSFGNGAGNTVPFSLAEIWQFPQAVNGAGSGALGLRRPQFGLGQFGDFIAGPNRETGPVGSEQRAASGGGGSRKRRESEEESPKAVSTSNVAPNAASDGDGKRLKGGASASRNESRDAKVEGAEASSGKPADQNNQAPPDPPKQDYIHARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLNTGIEAFPPKDFGQQTFDPATLPFGSQATRDYSRGSSPEWLHMQVGGAFERTT 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120843g00035 268 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 215 IPR036638 GO:0046983
Stsc120843g00035 268 Coils Coil 194 214 - -
Stsc120843g00035 268 Pfam Helix-loop-helix DNA-binding domain 159 198 IPR011598 GO:0046983
Stsc120843g00035 268 MobiDBLite consensus disorder prediction 35 154 - -
Stsc120843g00035 268 SMART finulus 157 203 IPR011598 GO:0046983
Stsc120843g00035 268 Gene3D - 157 220 IPR036638 GO:0046983
Stsc120843g00035 268 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 147 197 IPR011598 GO:0046983
Stsc120843g00035 268 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 81 238 IPR024097 GO:0006355
Stsc120843g00035 268 MobiDBLite consensus disorder prediction 114 132 - -
Stsc120843g00035 268 MobiDBLite consensus disorder prediction 78 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120843g00035 Stsc-Chr120843 162725 165410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120843g00035 1 226 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 50.607 2.42e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc120843g00035 HLH 7.8e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120843g00035 - - gmx:100784478 342.428