Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120843g00017 ATGGGTGCAGGGGACTACTACAAGGTTCTGAAGGTGAATCGTCACGCCACAGAAGAGGAGCTTAAGAAAGCATACAAGAGGCTTGCAATGAAGTGGCACCCAGATAGGAACCACCACCAAGAAATGAAGAACAAGGAAGAAGCTGAAGCAAAGTTCAAGCAGATATCTGAGGCCTATGATGTCTTGAGTGACCCCAAAAAGCGCCAGATCTATGATTTCTATGGCCATTACCCTCTCAATTCCATGAAGGTTAACAAAAAGGAACAAGACTTGGATAATAATGTGAAGGAGGAGGAGAAATCAGGGTTGGTGGTTGAGACCAAACTTGTCTGCACCCTTGAAGAGCTTTATAAAGGTTGCAGAAAGAAGTTAAAGATCTCAAGAAATGTTGTTGATGAACTTGGCAAGTTGAGGTGTGTGGAAGAAACCTTGAAGATAGACATTAAACCAGGTTGGAAAAAAGGAACAAAGATAACATTCCCCGGGAAAGGAAACCAAGAACAAGGAGGTTTTCCTCCTTCTGATCTAGTCTTTGTGGTGGACGAGAAACCACATGCTGTGTTCAAGAGAGATGGAAATGACTTGGTGATCACGCACNNNNNNNNNNGGAGGCGCTCTCGGGGAAGACACTGA 633 0.436 MGAGDYYKVLKVNRHATEEELKKAYKRLAMKWHPDRNHHQEMKNKEEAEAKFKQISEAYDVLSDPKKRQIYDFYGHYPLNSMKVNKKEQDLDNNVKEEEKSGLVVETKLVCTLEELYKGCRKKLKISRNVVDELGKLRCVEETLKIDIKPGWKKGTKITFPGKGNQEQGGFPPSDLVFVVDEKPHAVFKRDGNDLVITHXXXXRRSRGRH 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120843g00017 210 SMART dnaj_3 4 67 IPR001623 -
Stsc120843g00017 210 SUPERFAMILY HSP40/DnaJ peptide-binding domain 106 185 IPR008971 GO:0006457|GO:0051082
Stsc120843g00017 210 SUPERFAMILY Chaperone J-domain 4 80 IPR036869 -
Stsc120843g00017 210 CDD DnaJ 5 64 IPR001623 -
Stsc120843g00017 210 Gene3D DnaJ domain 1 99 IPR036869 -
Stsc120843g00017 210 CDD DnaJ_C 105 199 - -
Stsc120843g00017 210 PRINTS DnaJ domain signature 7 25 IPR001623 -
Stsc120843g00017 210 PRINTS DnaJ domain signature 25 40 IPR001623 -
Stsc120843g00017 210 PRINTS DnaJ domain signature 67 86 IPR001623 -
Stsc120843g00017 210 PRINTS DnaJ domain signature 47 67 IPR001623 -
Stsc120843g00017 210 FunFam Dnaj homolog subfamily b member 101 183 - -
Stsc120843g00017 210 ProSiteProfiles dnaJ domain profile. 5 75 IPR001623 -
Stsc120843g00017 210 Gene3D - 103 183 - -
Stsc120843g00017 210 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 199 - -
Stsc120843g00017 210 Pfam DnaJ domain 5 72 IPR001623 -
Stsc120843g00017 210 ProSitePatterns Nt-dnaJ domain signature. 52 71 IPR018253 -
Stsc120843g00017 210 Pfam DnaJ C terminal domain 105 198 IPR002939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120843g00017 Stsc-Chr120843 96209 98437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120843g00017 6 72 C2H2 Transcription Factor Family AT1G74250 38.806 4.00e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120843g00017 K09510 - gmx:100786068 312.383