Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120843g00010 ATGGAGGACGCTATCAACCAACTTTATGCTTCACCCATCGCACCTCTCCTTCATACTAATCAAACCCTTCTTCACCCTCCTCCTCTCTACCTTCACCCTTCTCATCAACCCTTCTTCGAAGCCATACCAGACAAGGAACACAACATTTTCGGGCTTGATGATGATGAAGATTTTGATTCTTGCTTGCAGCAGCAACAAGGTAGTAGCAGTAGTAACAAGAAGAGGAGGCTGAGAAGCGAGCAAGTTCAGTTTCTGGAGAAGAGCTTCGAGGTGGAGAACAAGCTTGAACCCGAAAGGAAGTTGCAACTTGCAAAAGAGATTGGTTTGCATCCAAGGCAAGTTGCCATCTGGTTTCAGAATAGAAGGGCAAGGTTCAAAACCAAGCGTATTGAGAAAGATTTTGCTACATTGAAACAAAGCTTTGATACCCTTCAACAACAATATGATCTTCTTCTTCGTGACAATCACACCTTACAACAACAGGTTGATTCATTGAAGAAGAGAGTGATTCCCAGAGAAGAAGAAAATATAGAGGAGATGGGTACTGTGAAAGTAGTGGTGGAAGATGGCACAACCACCACCAATTCATCATCAAAAAGTGATGTGCTTGATTCTGATAGTCCAAACTACACTGATGGAAACCATTCCTTCTCATCTCATCATGATTTCTCTTCTCATCATCATCAACAACAACAAGATAATATTGATAATAACAACAATCTCTTGAATTTGAAAACCCTCTCTTTCTTACCAAAGGTTGAAGATGGCAACACTTGCAATTTTGGGTTCAATGTTGTTGAAGACCAAGCCTTTGATTTTTGGTCTTACTGA 831 0.4091 MEDAINQLYASPIAPLLHTNQTLLHPPPLYLHPSHQPFFEAIPDKEHNIFGLDDDEDFDSCLQQQQGSSSSNKKRRLRSEQVQFLEKSFEVENKLEPERKLQLAKEIGLHPRQVAIWFQNRRARFKTKRIEKDFATLKQSFDTLQQQYDLLLRDNHTLQQQVDSLKKRVIPREEENIEEMGTVKVVVEDGTTTTNSSSKSDVLDSDSPNYTDGNHSFSSHHDFSSHHHQQQQDNIDNNNNLLNLKTLSFLPKVEDGNTCNFGFNVVEDQAFDFWSY 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120843g00010 276 Gene3D - 64 134 - -
Stsc120843g00010 276 FunFam homeobox-leucine zipper protein ATHB-6-like 76 122 - -
Stsc120843g00010 276 Pfam Homeodomain 73 126 IPR001356 GO:0003677
Stsc120843g00010 276 MobiDBLite consensus disorder prediction 188 218 - -
Stsc120843g00010 276 SMART HOX_1 71 132 IPR001356 GO:0003677
Stsc120843g00010 276 ProSitePatterns 'Homeobox' domain signature. 103 126 IPR017970 GO:0000981|GO:0006355
Stsc120843g00010 276 SUPERFAMILY Homeodomain-like 59 128 IPR009057 -
Stsc120843g00010 276 Pfam Homeobox associated leucine zipper 128 168 IPR003106 GO:0006355|GO:0043565
Stsc120843g00010 276 PRINTS Lambda-repressor HTH signature 108 124 IPR000047 GO:0003677
Stsc120843g00010 276 PRINTS Lambda-repressor HTH signature 99 108 IPR000047 GO:0003677
Stsc120843g00010 276 ProSiteProfiles 'Homeobox' domain profile. 68 128 IPR001356 GO:0003677
Stsc120843g00010 276 MobiDBLite consensus disorder prediction 188 236 - -
Stsc120843g00010 276 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 63 229 IPR045224 GO:0003700
Stsc120843g00010 276 CDD homeodomain 73 129 IPR001356 GO:0003677
Stsc120843g00010 276 Coils Coil 141 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120843g00010 Stsc-Chr120843 54059 55437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120843g00010 68 195 Homeobox Transcription Factor Family AT5G65310 52.344 7.90e-40 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc120843g00010 Homeodomain 8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120843g00010 K09338 - qsu:112000549 183.341