Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120843g00001 ATGGGTTTGGGTGCTGAGAATGGTAAGGTGGTGGAGCATTTGGATGTGTGTAAATCAAAGGGTGGGAAAAAGAAGAAGAAGAAAGATGATGGGATAGTTGAAGAGGAACAAGAGACTGGTTGTTGGGTTAGATTTAGGTTATTTGGGAGCTGCATTTCTTCAAGATCCAAGGTTGATAGCTCCGTTAGTGGCACCAGCACCAATTATGCCGAAAGTAAATCAACTATTGACACAAGTAGAGACCAACCAACACTTCCGGTTGTCTCTTCTACAACAACTAGTAATGCTGAAAGCAATGCATCCACTTCCAAACTTGAAGAGGAGCTTAAAGTTGCTTTGAGGCTGCGAAAGTTCACTTTCAATGATCTTAAGTTGGCGACAAGAAATTTTCGGCCTGAGAGTCTTCTTGGTGAAGGTGGGTTTGGTTGTGTATTCAAAGGATGGATCGAAGAAAATGGAACTGCTCCTGTGAAACCTGGTACAGGGCTCACTGTTGCTGTAAAAACTCTCAACCATGATGGACTACAGGGTCATAAAGAATGGCTGGCTGAAGTAAATTTTCTTGGTGATTTGGTTCATCCAAACCTTGTTAAACTTATAGGTTACTGTATCGAAGATGATCAAAGGTTGCTAGTATATGAGTTCATGCCCCGGGGAAGTCTAGAAAACCACTTGTTTAGGAGATCCCTGCCTCTTCCGTGGTCCATTAGGATGAAAATTGCGCTAGGAGCTGCGAAAGGTCTTGCTTTTCTTCACGAGGAAGCAGAACGGCCAGTAATATATCGGGATTTCAAGACTTCCAATATACTATTGGATGCCGACTACAATGCCAAGCTCTCTGACTTTGGACTTGCAAAAGATGGTCCCGAGGGCGATAAAACCCACGTCTCCACTCGAGTGATGGGGACCTATGGTTATGCAGCACCAGAATATGTCATGACAGGACATCTTACGTCAAAAAGCGATGTGTATAGTTTCGGAGTAGTACTACTTGAGATGTTGACCGGAAGAAGATCTATGGACAAAAACCGACCCAATGGCGAACATAACCTCGTGGAATGGGCTAGACCGCATCTAGGAGAGAAAAGAAGGTTCTACCGGTTGATAGACCCTCGCTTGGAGGGTCACTTCTCCATAAAAGGAGCTCAAAAAGCGGCTAGTCTGGCCGCACATTGCCTTTGTAGAGATCCAAAGGCAAGACCTCTCATGAGTGAAGTTGTAGAAGCTTTAAAGCCTCTGCCAAACCTCAAGGACATGGCTAGTTCATCATATTATTTCCAGACAATTCAAGCCGACCGGTTCAGTGCAAGCCCGAATACTAGAAACGGACGAACACAAGGCGCATTGCTGACACGGAATGGGCAGCATCCAAGGAGCCTTTCTTCCATACCACATGGGACACATGCATCTCCATATCACCACCAGTTTCCCCAACAATCACCAAAACCAAATGGAAAGGCACAGAGTTGA 1470 0.4503 MGLGAENGKVVEHLDVCKSKGGKKKKKKDDGIVEEEQETGCWVRFRLFGSCISSRSKVDSSVSGTSTNYAESKSTIDTSRDQPTLPVVSSTTTSNAESNASTSKLEEELKVALRLRKFTFNDLKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNFLGDLVHPNLVKLIGYCIEDDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDADYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPHLGEKRRFYRLIDPRLEGHFSIKGAQKAASLAAHCLCRDPKARPLMSEVVEALKPLPNLKDMASSSYYFQTIQADRFSASPNTRNGRTQGALLTRNGQHPRSLSSIPHGTHASPYHHQFPQQSPKPNGKAQS 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120843g00001 489 ProSitePatterns Protein kinases ATP-binding region signature. 136 168 IPR017441 GO:0005524
Stsc120843g00001 489 SUPERFAMILY Protein kinase-like (PK-like) 116 431 IPR011009 -
Stsc120843g00001 489 Gene3D Transferase(Phosphotransferase) domain 1 216 431 - -
Stsc120843g00001 489 MobiDBLite consensus disorder prediction 56 101 - -
Stsc120843g00001 489 FunFam Probable serine/threonine-protein kinase PBL8 216 430 - -
Stsc120843g00001 489 PANTHER OS01G0588500 PROTEIN-RELATED 92 413 - -
Stsc120843g00001 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 259 271 IPR008271 GO:0004672|GO:0006468
Stsc120843g00001 489 Pfam Protein kinase domain 133 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120843g00001 489 MobiDBLite consensus disorder prediction 435 489 - -
Stsc120843g00001 489 FunFam Serine/threonine-protein kinase BIK1 97 215 - -
Stsc120843g00001 489 CDD STKc_IRAK 136 413 - -
Stsc120843g00001 489 Gene3D Phosphorylase Kinase; domain 1 89 215 - -
Stsc120843g00001 489 ProSiteProfiles Protein kinase domain profile. 130 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120843g00001 Stsc-Chr120843 1 3342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120843g00001 106 410 Glycoside Hydrolase AT3G07070 57.143 2.27e-117 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc120843g00001 Pkinase 3.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120843g00001 - - gmx:100807510 868.996