Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120842g00036 ATGGATTTCCTTTCACTTCCTACAATAATTCCGGTAGCTCTAGCTCTAGTTCTTATCTACAACACATGGAAGATCAACAAATCTGTTGATGAAACCAACAAGAATCTTGAACAAGCACCAGAATTACCAGGATCCTTACCTTTGATTGGTCACCTCCATTTACTAGGAGCCAAAACACCACTTGCAAGAATCTTTGGTTCTTTTGCTGATAAGCATGGCCCTATATTCCAGATCCGTTTAGGAGCATACCCTGCCCTTGTCATTTCCAACAAAGAGGCAATCAAAGAGTGCTTCACCACAAACGACGTCGTTTTAGCCTCTCGCCCCAAGTCTAGCCATGGAATTCACCTTGGTTACAACTTTGCAGGGTTTGGATTTGCTCCTTATGGCCCTTATTGGACTAAGTTGAGGAAGCTTGCCATGCTTGAACTTCTCTCGCCACGCCGCATCGAATCCTTGAGGGATGTTTATGAATCCGAGATTGATACTTTGATCAATGATTTGTTGTCCTATGTTGGTGGTGATTCCGGTGTTAAGGTTGTCATAAGTGAGTGGTTGGAACGCCTCACTTTCAATATTATCATAAAGATGATCGCCGGAAAGAGGTACTTTAGCTACTTGAAAGATGCGGACGACGAAGAATCAAACAGAATTGTGAAGCTTATAAAAGATTTCATGCACGTTTCAGGTGAGCTTGTTCCTTCAGATTTGATTCCAATTATTGGATGGGTACCGATACAAGGGAAAGTGCTTAAGAACATGAAAAGAATTGCAAAGGATTTGGATACAATTGTGGGAAGTTGGGTTGAAGAGCATGATGTGAAGAGTGATGAGGAACAAAAGAACAAGAACAGCAACTCATCAAGTGAGAAACAGTATTTCATTGACTTCATGCTCTCTGTTATTGAAGATGATCCTGCATCTGGTCATACCAGGGACAATATCATCAAGGCAAATATTATGAATCTAATGTTGGCGGGATCAGACACAACATCCACCACAATGACATGGATCCTGTCCATGCTATTGAACAACAAGCATGCTTTGAAGCGTGCACAAGACGAAATTGATCTTCATGTGGGCAAGGAGAAAAGGGTAAAAGCATCCGATATAAAGAATCTAGTTTATTTACAAGCAATTTTCAAAGAAACTCTAAGATTATATCCGGCTGGACCTCTATTAGTACCTCATGAAGCAAGAGAAGATTGTTACATTCATGGCTATTACGTGCCAAAAGGAACACGTGTCTTTGCTAATGTGTGGAAGCTACATAGAGATCCAAGTATTTGGTCAGAGCCAGAGAAGTTTTCACCAGAGAGGTTCATTAATGGCAATGGGGAACTCAGTGAAGATCACAATAGTTTTGAATATCTTCCATTTGGATCAGGTAGAAGAGCTTGTCCAGGATCAACATTTGCCATTCAAGTGAGTCTCATAACACTTGCTAGGTTGCTTCAGAAGTTTGATTTGAATGTGCCAATGTGTGAACCCATTGACTTGAAAGAAGGTTTGGGCATAACCTTACCCAAATTAACTCCTTTACAAATCACATTGACCCCACGAATATAA 1569 0.4073 MDFLSLPTIIPVALALVLIYNTWKINKSVDETNKNLEQAPELPGSLPLIGHLHLLGAKTPLARIFGSFADKHGPIFQIRLGAYPALVISNKEAIKECFTTNDVVLASRPKSSHGIHLGYNFAGFGFAPYGPYWTKLRKLAMLELLSPRRIESLRDVYESEIDTLINDLLSYVGGDSGVKVVISEWLERLTFNIIIKMIAGKRYFSYLKDADDEESNRIVKLIKDFMHVSGELVPSDLIPIIGWVPIQGKVLKNMKRIAKDLDTIVGSWVEEHDVKSDEEQKNKNSNSSSEKQYFIDFMLSVIEDDPASGHTRDNIIKANIMNLMLAGSDTTSTTMTWILSMLLNNKHALKRAQDEIDLHVGKEKRVKASDIKNLVYLQAIFKETLRLYPAGPLLVPHEAREDCYIHGYYVPKGTRVFANVWKLHRDPSIWSEPEKFSPERFINGNGELSEDHNSFEYLPFGSGRRACPGSTFAIQVSLITLARLLQKFDLNVPMCEPIDLKEGLGITLPKLTPLQITLTPRI 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120842g00036 522 PANTHER CYTOCHROME P450 82C3-RELATED 14 521 - -
Stsc120842g00036 522 PRINTS E-class P450 group I signature 69 88 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120842g00036 522 PRINTS E-class P450 group I signature 315 332 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120842g00036 522 PRINTS E-class P450 group I signature 378 396 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120842g00036 522 PRINTS E-class P450 group I signature 467 490 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120842g00036 522 PRINTS E-class P450 group I signature 335 361 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120842g00036 522 PRINTS E-class P450 group I signature 93 114 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120842g00036 522 PRINTS E-class P450 group I signature 457 467 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120842g00036 522 PRINTS E-class P450 group I signature 189 207 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120842g00036 522 PRINTS E-class P450 group I signature 419 443 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120842g00036 522 CDD CYP82 73 521 - -
Stsc120842g00036 522 Pfam Cytochrome P450 40 510 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120842g00036 522 Gene3D Cytochrome P450 29 519 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120842g00036 522 SUPERFAMILY Cytochrome P450 43 521 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120842g00036 522 PRINTS P450 superfamily signature 379 390 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120842g00036 522 PRINTS P450 superfamily signature 458 467 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120842g00036 522 PRINTS P450 superfamily signature 326 343 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120842g00036 522 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 460 469 IPR017972 GO:0005506|GO:0016705
Stsc120842g00036 522 FunFam Cytochrome P450 82C4 29 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120842g00036 Stsc-Chr120842 203658 206162 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120842g00036 39 522 Cytochrome P450 AT4G31940 47.773 1.10e-160 465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120842g00036 - - gmx:100790675 772.311