Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120842g00014 ATGCCGCTTGTTTCCACCCCATATCCATTGTGGTCCTTGTACCTCCTCCATGCTTCCCTTCTCTTTTACGTAAACTCAGCGTGGCTACAGCCTACAAAAGCCGCCGCCACCTTGGGAAACAATACTGATTTCATGGCATTGCTTAAGTTCAAAGAATCAATATCTGATGACCCTCATGGAGTTTTGACATCATGGAATGCCTCTACCCACTTTTGCAACTGGTATGGAATCACATGCAGCAGCAAGCATCAAAGGGTTGTAATGTTGAATCTCAGAAGATCTGATTTCCGTGGGATCATATCGCCTTACATCGGCAATCTCTCCTTTTTGAGATACCTTTATCTCCAAAACAATAGCTTCTATGGAGAAATTCCATCGGAGTTAGGCCGTTTGTTCAGACTACAACAACTCTCACTCTCAAACAACAGACTAAAAGGGGAGTTTCCTATCACATTGACAAATTGCTCTGAGCTAAGGCACTTAAATGTGTCAAGCAACAATCTCTATGGCAAAATACCAATAGAGATTGGATCACTAAGGAAGCTTGAAAAGTTGAATCTTTTCACAAACAATTTCTCTGGACAAATCCCACCTTCCATGTGGAATATTTCTTCTCTTGATGTTCTCTCTGTGGCCTATAATAACTTGGAGGGCAATTTACCAGAAGAAATGGGACAACTTAGAAATTTGTCAGTTTTGGCAGTACCTGGAAACAAATTGTCCGGTATGCTTCCTTCTTCACTTTACAATATGTCATCTCTCTCTTTCATCACAGCTTCAGCAAACCAATTTCGCGGCTCCCTTCCGGCCAACATGTTCTCCACCCTCACCAATCTGCAAGTGTTTGCCGTTGGAGGGAATCAAATGTCAGGTCCTATCCCAACTTCCATCACAAATGCATCTTTACTTCAAGTATTTGATATTGGTGTTAACAGTTTTGTTGGACAAGTTCCAAGTCTAGGAATGTTGAAAGACCTTCACTGGCTAAACTTAAATTATAATAATCTAGGCAGTGGTTCAGATAATGACTTGGACTTTATTACATCTTTGGTAAATTGTACCAAATTGGAAAATTTGATTCTGTCAACCAACAAATTTGGGGGTCATTTGCCCAACTCCATAGGTAATTTGTCAACCGAACTCATTCGACTATATCTTGGTGATAACCAGATATATGGAACTATTCCTGAAACCATAGCCAATTACATAAATTTAATTGCCTTGGTTCTAGAATACAATCAATTTACTGGGACTGTTCCAAATACTTTTGGGAAGCTTCATAAGCTCCAATTGTTAGGTTTGGGGATAAACCAACTGTCAGGACAGGTACCTACCTCCTTGGGTAATCTTACTCAATTGCTTCAAATAAGCATTTCAAACAACAAGTTGGAAGGGAAAATTCCACCCATAGTTGGAAATTGGCAAAAATTACAATACCTAGAGCTTTCAGGGAACAATCTTAGTGGTATTATACCCTTGCAGGTATTTAGCCTTTTTACCTTGTCAACATTGCTGAACTTATCTCATAACTCATTATCTGGCACTCTACCCGTTGAGGTAGGAACCCTTAATAACCTTGGCACTTTGGATATATCTGAAAATTATATGTCTGGAGAGATTCCTGCATCCATAGGAGAGTGTGTAAATTTGGAAAACCTAAACTTACAGGGTAATTCCTTCAATGGAACAATACCTCCATCAATTGCTTCACTAAAGAGCCTCATCCAGTTGGATCTATCACAAAACAAATTGTCTGGATCGATTCCAACAGCATTTCAGAGCCTTTCTCTACTAACATACTTGAATTTGTCTTTCAATAAATTGGATGGCAGAGTACCAACAGGAGGAGTTTTCAAGAATACAAGTGCAATATCAATAGCAGGCAACAGTAAGCTTTGTGGCGGCATCTCAGAGTTCCACCTGCCACCATGCCCCAATACCAACCAACCAAAAAAGCAGCATAACTTGAAGCTAGTGATAATCATAATTTGTGTGGTCATCTGTCTTCTATTGTTGTCAATTCTTACTATATGTTGGAGTAGGAGGCGAAAGCAACTATCATCTTTGATGGCAAAAACAACAGACCAGAGCTCCACTCTGTCGTACCAAAGCTTGCATGCTGCTACAGAAGGGTTTTCTACCAACAATTTGATTGGTTCTGGGAGTTTTGGTTCTGTGTACAGAGGACTCCTAGAATCAGAAAACAGGGTTGTTGCCATAAAGGTGATCAACCTTCAAATGAGAGGAGCTCATAAGAGTTTCATTGCTGAATGCAGTGCACTAAAAGTTATTAGACATAGAAACCTTGTGAAAATTCTTACATGCTGCTCAAGCATAGATTATCATGGGGAAGAATTCAAAGCATTGGTTTTTGAGTACATGTCTAATGGAAGCTTAGAAAAGTGGCTTCATCCACAAGGTGAAACTGCAGATCAAACACATACTTTGGACCTTGCTCATAGGTTAAATATTCTTATAGATATAGCTTCAGCTTTACATTATCTTCACTATGAGTGTGAACAACCAATTGTTCATTGTGATATAAAGCCGAGTAATGTCCTTATTAATGATGACATGGTAGCTCATGTGACTGATTTTGGATTAGCAAGGATTCTCTCAACAATAAATGGCTTCTCTCGTAACCAATCCAGCACAACTGGATTCAAAGGGACAATTGGATATGCTCCTCCAGAGTATGGAATAGATTCAGAGGTGTCAACACAAGGTGATGTATATTCTTTTGGGATTCTAGTATTGGAAATGCTAACAGGCAGAAGACCCACCGAAGAATTTTTTGAAGATGGTGACAATCTTCATAACTATGTGGGAAGGGCATATCCAAACAAGCTTTTGGAAATTGTTGACTCAACCTTTCTACCAAAACAATTAGAGAAAACATTAGCTGAAAATGAAGGCAACATGGAGACATGTATATTTTCTCTAATCAAAATTGGACTAGCTTGCTCAGTTGAATCTCCAAAAGAAAGAATAAATATGAGGCATGTCATTAGGGAGCTAAATGTAACCAGAAATGCATTTCTTTGTGGTTGA 3051 0.3913 MPLVSTPYPLWSLYLLHASLLFYVNSAWLQPTKAAATLGNNTDFMALLKFKESISDDPHGVLTSWNASTHFCNWYGITCSSKHQRVVMLNLRRSDFRGIISPYIGNLSFLRYLYLQNNSFYGEIPSELGRLFRLQQLSLSNNRLKGEFPITLTNCSELRHLNVSSNNLYGKIPIEIGSLRKLEKLNLFTNNFSGQIPPSMWNISSLDVLSVAYNNLEGNLPEEMGQLRNLSVLAVPGNKLSGMLPSSLYNMSSLSFITASANQFRGSLPANMFSTLTNLQVFAVGGNQMSGPIPTSITNASLLQVFDIGVNSFVGQVPSLGMLKDLHWLNLNYNNLGSGSDNDLDFITSLVNCTKLENLILSTNKFGGHLPNSIGNLSTELIRLYLGDNQIYGTIPETIANYINLIALVLEYNQFTGTVPNTFGKLHKLQLLGLGINQLSGQVPTSLGNLTQLLQISISNNKLEGKIPPIVGNWQKLQYLELSGNNLSGIIPLQVFSLFTLSTLLNLSHNSLSGTLPVEVGTLNNLGTLDISENYMSGEIPASIGECVNLENLNLQGNSFNGTIPPSIASLKSLIQLDLSQNKLSGSIPTAFQSLSLLTYLNLSFNKLDGRVPTGGVFKNTSAISIAGNSKLCGGISEFHLPPCPNTNQPKKQHNLKLVIIIICVVICLLLLSILTICWSRRRKQLSSLMAKTTDQSSTLSYQSLHAATEGFSTNNLIGSGSFGSVYRGLLESENRVVAIKVINLQMRGAHKSFIAECSALKVIRHRNLVKILTCCSSIDYHGEEFKALVFEYMSNGSLEKWLHPQGETADQTHTLDLAHRLNILIDIASALHYLHYECEQPIVHCDIKPSNVLINDDMVAHVTDFGLARILSTINGFSRNQSSTTGFKGTIGYAPPEYGIDSEVSTQGDVYSFGILVLEMLTGRRPTEEFFEDGDNLHNYVGRAYPNKLLEIVDSTFLPKQLEKTLAENEGNMETCIFSLIKIGLACSVESPKERINMRHVIRELNVTRNAFLCG 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120842g00014 1016 Gene3D Ribonuclease Inhibitor 40 186 IPR032675 -
Stsc120842g00014 1016 PANTHER OS04G0122200 PROTEIN 225 1001 - -
Stsc120842g00014 1016 PRINTS Leucine-rich repeat signature 477 490 - -
Stsc120842g00014 1016 PRINTS Leucine-rich repeat signature 571 584 - -
Stsc120842g00014 1016 SMART LRR_typ_2 107 131 IPR003591 -
Stsc120842g00014 1016 SMART LRR_typ_2 571 594 IPR003591 -
Stsc120842g00014 1016 SMART LRR_typ_2 474 498 IPR003591 -
Stsc120842g00014 1016 SMART LRR_typ_2 595 620 IPR003591 -
Stsc120842g00014 1016 SMART LRR_typ_2 227 250 IPR003591 -
Stsc120842g00014 1016 SMART LRR_typ_2 179 203 IPR003591 -
Stsc120842g00014 1016 SMART LRR_typ_2 426 450 IPR003591 -
Stsc120842g00014 1016 Pfam Protein kinase domain 713 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120842g00014 1016 SUPERFAMILY L domain-like 380 634 - -
Stsc120842g00014 1016 SMART serkin_6 712 1014 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120842g00014 1016 CDD STKc_IRAK 718 1007 - -
Stsc120842g00014 1016 Gene3D Transferase(Phosphotransferase) domain 1 794 1013 - -
Stsc120842g00014 1016 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 794 1015 - -
Stsc120842g00014 1016 SUPERFAMILY Protein kinase-like (PK-like) 694 1006 IPR011009 -
Stsc120842g00014 1016 Pfam Leucine rich repeat 133 192 IPR001611 GO:0005515
Stsc120842g00014 1016 Pfam Leucine rich repeat 549 608 IPR001611 GO:0005515
Stsc120842g00014 1016 Gene3D Phosphorylase Kinase; domain 1 675 793 - -
Stsc120842g00014 1016 ProSitePatterns Serine/Threonine protein kinases active-site signature. 843 855 IPR008271 GO:0004672|GO:0006468
Stsc120842g00014 1016 FunFam LRR receptor-like serine/threonine-protein kinase EFR 683 793 - -
Stsc120842g00014 1016 ProSitePatterns Protein kinases ATP-binding region signature. 718 741 IPR017441 GO:0005524
Stsc120842g00014 1016 SUPERFAMILY L domain-like 41 336 - -
Stsc120842g00014 1016 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 79 344 - -
Stsc120842g00014 1016 ProSiteProfiles Leucine-rich repeat profile. 476 497 IPR001611 GO:0005515
Stsc120842g00014 1016 Pfam Leucine rich repeat N-terminal domain 41 80 IPR013210 -
Stsc120842g00014 1016 ProSiteProfiles Protein kinase domain profile. 712 1014 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120842g00014 1016 Gene3D Ribonuclease Inhibitor 342 648 IPR032675 -
Stsc120842g00014 1016 Gene3D Ribonuclease Inhibitor 187 341 IPR032675 -
Stsc120842g00014 1016 FunFam LRR receptor-like serine/threonine-protein kinase EFR 345 650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120842g00014 Stsc-Chr120842 69832 73034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120842g00014 40 1014 Receptor kinase-like Gene Family AT3G47570 46.613 0.0 847
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc120842g00014 Pkinase 2.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120842g00014 - - qsa:O6P43_025027 1175.23