Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120842g00008 ATGGGCTACCCAAAAGTGAATGAAATGTTGCTTAAGGACCTTGAAGAAATGAAATTCCCATTGGCACGAGCAATCCGGGCACTTTATTATTCAGGCAACAAGAGCTTAGAGGATGCAATAATTTGGACAATTGATCATGAAAATGACCCTGATATTGATGTGATGCCTCTGGTGGATGTAGATATTGATATTGATTCTTCTCAATCCTTCCCTATCACAGAAGAAATCAGAATCAAAGCACAGAAGTTAAGGGAACAAGAGCGTACCAAGAAAGAGGAGGAACTAAAAAGATCGGAGAGGGAACGGGAGAAGGAGAGGATTCAAGCAGGTAAGAGACTCCTTGAGGGAAAAAGAATTGCTGAAGAAAATGAAAGACAACGGAACTTAGCCTTAAGAAAAGCAGAAAAGGAAGAAGAGAAAAGGGCAAGAGGAAAGGTTCTCCAAAAACTAGAACAGGACAAGATAAATAGAAGATCTAAGCATGGATCAATACTGCCTATGGAAAACGTAGCTAATGTCAGATTATCTGCTACTACTTTGGAACAGCAAGATAAGATATTGCAGAAACCAAAACCTGTTTACACAACTGAAAAGGTTGATTACTTGAGGGAATGTTTAAGGTCTCTCAAGCGTAAACACCAGGCTGAGCAAGGCAGAGTCAAAAAGGCCTTCGAAACACTTTTAATTTACGTTCGAAATGTTGCCAAGAATCCGAACGAGGAAAAGTACCGGAAGATCAGACTAACCAATCCATTATTCCAGGAAAGAGTTGCAAGTTTGGATGGAGGTGTGGAGTTTCTTGAACAATGTGGTTTTGAGAGAACCGGTGACTTCTTGTATCTACCTCATGAAAAGACTGACATAACATTACTAAATTCAGCTGGTGATGTGTTAAATTCTGCAATGACAAATCCTTTCTTTGGACTTCTAAGTACTTAG 939 0.3962 MGYPKVNEMLLKDLEEMKFPLARAIRALYYSGNKSLEDAIIWTIDHENDPDIDVMPLVDVDIDIDSSQSFPITEEIRIKAQKLREQERTKKEEELKRSEREREKERIQAGKRLLEGKRIAEENERQRNLALRKAEKEEEKRARGKVLQKLEQDKINRRSKHGSILPMENVANVRLSATTLEQQDKILQKPKPVYTTEKVDYLRECLRSLKRKHQAEQGRVKKAFETLLIYVRNVAKNPNEEKYRKIRLTNPLFQERVASLDGGVEFLEQCGFERTGDFLYLPHEKTDITLLNSAGDVLNSAMTNPFFGLLST 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120842g00008 312 SUPERFAMILY PUG domain-like 201 306 IPR036339 -
Stsc120842g00008 312 Coils Coil 119 140 - -
Stsc120842g00008 312 Coils Coil 76 108 - -
Stsc120842g00008 312 PANTHER F13M7.16 PROTEIN 1 310 - -
Stsc120842g00008 312 Gene3D - 8 52 - -
Stsc120842g00008 312 Pfam PUB domain 220 287 IPR018997 -
Stsc120842g00008 312 SUPERFAMILY UBA-like 6 55 IPR009060 GO:0005515
Stsc120842g00008 312 Gene3D - 204 301 - -
Stsc120842g00008 312 SMART PGNneu 222 283 - -
Stsc120842g00008 312 MobiDBLite consensus disorder prediction 85 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120842g00008 Stsc-Chr120842 51448 54922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120842g00008 1 310 C2H2 Transcription Factor Family AT1G04850 55.414 1.51e-87 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120842g00008 - K24348 gmx:100781260 392.119