Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120841g00047 ATGGCTGCATCACTTGTTGGAGGAGCTTTTCTCTCTTCTTTTCTCAATGTTCTTTTTGACCGGCTCTCTGATCCTGCCATCATCAACATGATGCAGAGAAAGAAGGTTGACCAGAAGCTGCTTCAAAGGCTGGAGACAATCCTGAACGTGGTTGAAGCTGTGCTGAATGATGCTGAGAAGAAACAGATCACTGACCCTGCTGTCAAGAGGTGGCTTGAGAATCTCCAAGATGCTGTGTATGATGCTGATGACTTGTTGGATGAAGTCGCTACCAAAGCTGCCACTCAGAAAGATCCACCAGGTAACTTCCTGTCTCGCTTTCTCAATTTGCAAGATAGGGAGATGGTTACTAGGATTGAAGAAATCATTGCTAGACTTGATGATATTGCAAAACACAAAGATATCCTTCGTCTAGAAAAGATTGCAGGCAAGAACATGTCAGGGAGGCTTCCATCAACATCACTAGTTAAAAAATCTGATATATTTGTTGGAAGGGACAAAGACAAGGATACAATTGTGAACTTGTTGCTGGATGATGCTAACAGTGGTGATCTCTCTGTGATTCCCATCGTGGGCATGGGTGGGATAGGAAAAACTACTTTGGCTAAATCGGTTTTTAATGATGACGATGTGCAGCAAAAGTTTCATGTGAAGGTGTGGGTTTGTGATGGCGAGGAGGAATTTGATGTTCTGAAGGTGACAAAGGCTGTGATAGAGAAAACTTGTAGCTCTCCTTGTTACTCAAATGATTTAGATACAGCTCAAAATCATTTGAAGAATGCTCTTGCAGGGAAGAACTTCTTCGTTGTTGTGGATGATGTATGGAGCTGTAATCGTGAGGCTTGGGAAAGTTTTCTAACTCCTTTTGAATGCGGAAGTCAGGGAGGCAAGTTTCTTGTAACAACCCGTCTTGATATGGTTGCTTCTATGGTGAAGACACGACATAATGAAGCTCACAATTTGAGTCTGTTGGATGAAGAGCAATGTTGGTCAGTGTTTGCAAATCGTGCATGGGGTCCTGCTGAATCCCCAAGCGGTTCAGCTTTAGAAAAAATTGGTAGAAAAGTCGTAGCAAAATGTAAAGGATTACCTTTGGCAGCTCAAACACTTGGAGGGTTATTGCGGGGGGAAGATGATGAAAAAGTTTGGAATGATGTTTTGAATAGTGACATTTGGGAATTTTCTGAGGATAAATGTGGGATTCTTCCAGCATTGAGAATTAGTTATTCCCACCTCCCTTCTTATTTAAAACGTTGTTTTGTTTATTGTTCTTTGTATCCCAAGGACTATCAATTTCGTAGAGAGGAATTGGTGTTATTGTGGATGGCAGAGGGTTTTCTACAACGGCCAAAGGCTGGAAGCACTTTAGAAGAAGTTGGTTGTGAATATTTTAATGATTTAGCTTCAAGATCATTCTTTCAACCTTCTAATGATGCAGATTCATTTGTGATGCACGATCTCATGCATGATTTAGCGACATTCTATGGTGAAAAGTTCTATTTTAGAACCTTTGAAGTCAAGAATGAACTCAAGCATGATACAAAAACTCGTCATTTGTCATATGTTCTCGGTAGCGAAGATTCAATCTCAAAGATCCAAGAAGTATGTGATAGTTTAAAGCATGCAAGGACATTGCTGGAAATGGATGCAGATGATGGATTCTCAGAGGGAATAATCGATCCTTGTCACTTACTAGAACAGTTGAAGTGCTTACGAGTTTTGTCATTTAAATTCTTTTCTGGTGAGGAAGGCTTGTTGCACGATTCAATTGGTGAATTGATCCATTTACGCTATTTAGATCTCTCTGAAACAGGTGTCACGACATTGCCAGAGTCATTGAGTTTCTTGTACAATTTACAGACTTTGAAGTTGAGATACTGTGTAGAACTTAAGAAACTTCCCAGCAACATGCAAAATCTTGTGAATTTGCGTCATCTTGATACTGTAGGCACTCAACTAGAAGAGATGCCAAAAGGGATGAGCAAATTACAAGATTTGCAATTTTTAAGTAACTATGTGGTGGGGAAGCATGATGAAAATGGAGTTGGGGAATTGGGAGGACTAGCACATCTTCATGGGTCCTTGTTTATTCAGAAATTAGAGAATGTTAAGAATGGTGGTGAAGCATGGAATGCAAGGATGGCTGAAAAAATACACCTGAATGATCTACGATTGAGTTGGTCATCAGTTGAAGAAAGTGAGGTTTGTGATTCCCAAACTGAAAAGGATGTACTTGACAAATTACATCCTCACAAAAACTTGAAAGAGCTAAGGATTTTTCGTTACAGAGGTACGATGTTTCCAGATTGGGTAGGACAGCCTTCATACAACAACATCACTGAGTTGTGGCTGAGTGGATGCAAGAATTGTTGGGTGGTTCCTTCACTTGGACAGTTACCCTCTCTCATGGAATTGAGGTTTTCAGGATTTGATATGGTGAAGAAGATTGGTGCTGAATTCTATAAGGCTGATGGAACTCATCATCATCATCATCAAGACACACCCTTCCGATCCCTTAAAACTCTGCGCTTTGAAAGCATGCGTAGCTGGGAGGAATGGGAGTCATATGAATGTCGTGATGATGATCGTGCACCATTTCCTCAACTTGAGAATCTTTGGATAGAGGAGTGTCCAAAGTTAAGAGGAGATTTGCCCACTTTCCTTCCGTCTTTGAAGGACCTTTGGATTGTTGAATGCTCAGAGCTTGGTTGTGATCTGCCAAGAGCTCCCATCATACGCCAGTTAAGAATATATGGCAAACAGGAAGCAAGAATGCGGGAGTTATCACTTTCCATGTTGGAGTCACTAAGAGTTAATGGAGATCATCTGGTGGAGTATGTGTTTGATGCCATCACCCACACCCAACCAACCTCTCTCAGACAGTTAAGCATCTCAGACTGCTCATCAGCCATATCAATTGCAGGGGATTCTTTGCCTCCTTCATTGCAAGGGTTGTACATCAACGATTGCAAGAATGTAGAGTTCCCAATGCAACACCAACAACATCACTCTCTACAGGGATTACGAATAGACAACAGCTGTGATTCACTTACTTCCTTCACATTCCCAGCCTTCCCAAATCTCATTTCTCTGACAATCGCAGGACGTGAAAATTTGACATCGCTGGAGGAGCTGTTTGAAGAATGCCCTAAGTTGGAGAGCATAAGACTGCCTGCCTCTTTAAGGGAACTCTTCATCAGGGGATGTCCATTGTTGGGTGAACGCATCCAGAGGAAGGATCCCCACATTTGGCCATCCATTTCCCACATCCCCAAAATATATGTTGATGGGAAAAGAATTGGCAATGAGTCAACATCTTAA 3321 0.4152 MAASLVGGAFLSSFLNVLFDRLSDPAIINMMQRKKVDQKLLQRLETILNVVEAVLNDAEKKQITDPAVKRWLENLQDAVYDADDLLDEVATKAATQKDPPGNFLSRFLNLQDREMVTRIEEIIARLDDIAKHKDILRLEKIAGKNMSGRLPSTSLVKKSDIFVGRDKDKDTIVNLLLDDANSGDLSVIPIVGMGGIGKTTLAKSVFNDDDVQQKFHVKVWVCDGEEEFDVLKVTKAVIEKTCSSPCYSNDLDTAQNHLKNALAGKNFFVVVDDVWSCNREAWESFLTPFECGSQGGKFLVTTRLDMVASMVKTRHNEAHNLSLLDEEQCWSVFANRAWGPAESPSGSALEKIGRKVVAKCKGLPLAAQTLGGLLRGEDDEKVWNDVLNSDIWEFSEDKCGILPALRISYSHLPSYLKRCFVYCSLYPKDYQFRREELVLLWMAEGFLQRPKAGSTLEEVGCEYFNDLASRSFFQPSNDADSFVMHDLMHDLATFYGEKFYFRTFEVKNELKHDTKTRHLSYVLGSEDSISKIQEVCDSLKHARTLLEMDADDGFSEGIIDPCHLLEQLKCLRVLSFKFFSGEEGLLHDSIGELIHLRYLDLSETGVTTLPESLSFLYNLQTLKLRYCVELKKLPSNMQNLVNLRHLDTVGTQLEEMPKGMSKLQDLQFLSNYVVGKHDENGVGELGGLAHLHGSLFIQKLENVKNGGEAWNARMAEKIHLNDLRLSWSSVEESEVCDSQTEKDVLDKLHPHKNLKELRIFRYRGTMFPDWVGQPSYNNITELWLSGCKNCWVVPSLGQLPSLMELRFSGFDMVKKIGAEFYKADGTHHHHHQDTPFRSLKTLRFESMRSWEEWESYECRDDDRAPFPQLENLWIEECPKLRGDLPTFLPSLKDLWIVECSELGCDLPRAPIIRQLRIYGKQEARMRELSLSMLESLRVNGDHLVEYVFDAITHTQPTSLRQLSISDCSSAISIAGDSLPPSLQGLYINDCKNVEFPMQHQQHHSLQGLRIDNSCDSLTSFTFPAFPNLISLTIAGRENLTSLEELFEECPKLESIRLPASLRELFIRGCPLLGERIQRKDPHIWPSISHIPKIYVDGKRIGNESTS 1106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120841g00047 1106 SUPERFAMILY RNI-like 861 1077 - -
Stsc120841g00047 1106 Coils Coil 41 61 - -
Stsc120841g00047 1106 FunFam Probable disease resistance protein At1g63360 409 494 - -
Stsc120841g00047 1106 Pfam NB-ARC domain 166 388 IPR002182 GO:0043531
Stsc120841g00047 1106 Gene3D - 142 318 IPR027417 -
Stsc120841g00047 1106 Gene3D - 15 128 - -
Stsc120841g00047 1106 Pfam Rx N-terminal domain 10 102 IPR041118 -
Stsc120841g00047 1106 Gene3D - 323 407 IPR042197 -
Stsc120841g00047 1106 SUPERFAMILY L domain-like 483 900 - -
Stsc120841g00047 1106 Gene3D - 408 493 IPR036388 -
Stsc120841g00047 1106 PRINTS Disease resistance protein signature 187 202 - -
Stsc120841g00047 1106 PRINTS Disease resistance protein signature 261 275 - -
Stsc120841g00047 1106 PRINTS Disease resistance protein signature 360 374 - -
Stsc120841g00047 1106 PRINTS Disease resistance protein signature 591 607 - -
Stsc120841g00047 1106 PANTHER DISEASE RESISTANCE PROTEIN RP 53 877 IPR044974 GO:0006952
Stsc120841g00047 1106 Gene3D Ribonuclease Inhibitor 922 1080 IPR032675 -
Stsc120841g00047 1106 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 423 IPR027417 -
Stsc120841g00047 1106 Gene3D Ribonuclease Inhibitor 522 921 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120841g00047 Stsc-Chr120841 289798 294109 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120841g00047 184 377 WRKY Transcription Factor Family AT5G45050 26.804 1.26e-07 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120841g00047 - - ahf:112730660 1597.41