Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120841g00046 ATGGCTTTCAAGAAATTCTCCATTCTCATGAATCTCTTTGTAACCTATTTTCTCCCCTTCTTCTTGTTAATGACATCTTTGTCCCTAGCTGAAAATGACCATGAATCCATTTGCCAATCAACAATAGACCCTTCTTATTGCAAGAACATGCTTGCAAATCAAAATGGCAACAACAACAACATATATGACAATGGCCGTTTCTCATTCCAAAAATCAATATCCCAAACCCAAAAATTCCTAACCCTAGTTAACTCATATCTCCAAAACACAAACACTTTGTCACAACCCACAATTGGGGCACTCCAAGATTGCAACTTTCTCACTCAACAAAGCTTAGAGTATTTATCAAACACCTTCACCACAATCAATCAAACTAGCAATAGTAATAATCTTCTTCCATCTTCACAAGCTGAAGATTTTCAAACAATTCTTAGTGCGGTTGTGACAAACCAACAAACTTGCTTAGAGGGTTTATCACAAACTTCTTTTGATCAAGATTTGAAGGAAGAATTATCTTCATCATTATCCAATGACACAAAACTCCATAGTGTTTCCCTTACTTTGTTCAACAAAGCTTGGGTGCCAAGCAAGAAAACCATAACATCATGGCCAAACAACAAGCACAACTTCAACTTCCACAATGGTAATCTACCATTGAAGATGTCCAAGAAAGCTCAAGAGATTTATGATCATGCCAAGAAGCATGGGCATGGGAGGAAATTGCTCCAAAATAACGCGGACAGCAGCGGCGGCGACGGAAGTGTTTTGGTGAGTGATATTGTGGTTGTGAGCCAAGATGGGAGTGGAAACTTTACAACCATAAACGATGCAATTCGCGCAGCACCAAATAATAGTCTTGCTAGTGATGGATACTTCTTTATCTTTGTAAGTGAAGGTGTTTATGAAGAGTATGTTTCCATTGATAAGACCAAGAAGTATCTTATGATGGTTGGTGAAGGGATTAACCAAACAATCATCACCGGTAGTCACAATGTTGTTGATAATTTCACAACATTCAATTCCGCAACATTCGCTGTGGTAGGTCAAGGGTTTGTTGCAGTAAACATAACATTCCGCAACACTGCTGGACCGAGCAAGCACCAAGCAGTTGCATTAAGAAGTGGCTCAGATTTGTCCATCTTCTATAGTTGTAGTTTCGAAGGATATCAAGACACGCTTTACACACATTCTCTTAGACAATTTTATAGAGAGTGTGATATTTATGGTACAGTCGACTTCATATTTGGTAACGCTGCTGTGGTTTTTCAAGATTGTAACATCTATCCACGCCTTCCGATGGCGGGACAATTCAATACCATCACCGCACAAGGCAGAACCGATCCAAATCAAAACACAGGAACTTCAATTCAGAATGCAAACGTTAAAGCTGCCGACGATTTGGCGCCAAATGTTGGAAGCGTTCAAACGTACCTTGGGAGGCCATGGAAGCAATATTCAAGGACAGTGTTCATGGAATCATTCATTGATGGTTTTATAAACTCTGCAGGATGGTGTGAATGGAGTGGTGATTTTGCACTTAGCACATTGTACTATGCTGAATTTAACAACACTGGAAATGGTTGTGACACTTCTAACCGTGTTACATGGCCTGGTTTTCATGTTCTTGTTAATTCCACTGATGCTGCTGCTTTCACTGTTTCTAATTTCTTGAGTGGGGATAATTGGATCCCTCAAGCTGGTGTTCCATATTTGAGTGGATTGAATAATTGA 1731 0.3963 MAFKKFSILMNLFVTYFLPFFLLMTSLSLAENDHESICQSTIDPSYCKNMLANQNGNNNNIYDNGRFSFQKSISQTQKFLTLVNSYLQNTNTLSQPTIGALQDCNFLTQQSLEYLSNTFTTINQTSNSNNLLPSSQAEDFQTILSAVVTNQQTCLEGLSQTSFDQDLKEELSSSLSNDTKLHSVSLTLFNKAWVPSKKTITSWPNNKHNFNFHNGNLPLKMSKKAQEIYDHAKKHGHGRKLLQNNADSSGGDGSVLVSDIVVVSQDGSGNFTTINDAIRAAPNNSLASDGYFFIFVSEGVYEEYVSIDKTKKYLMMVGEGINQTIITGSHNVVDNFTTFNSATFAVVGQGFVAVNITFRNTAGPSKHQAVALRSGSDLSIFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQDCNIYPRLPMAGQFNTITAQGRTDPNQNTGTSIQNANVKAADDLAPNVGSVQTYLGRPWKQYSRTVFMESFIDGFINSAGWCEWSGDFALSTLYYAEFNNTGNGCDTSNRVTWPGFHVLVNSTDAAAFTVSNFLSGDNWIPQAGVPYLSGLNN 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120841g00046 576 SMART PMEI_2 29 188 IPR006501 GO:0004857
Stsc120841g00046 576 Pfam Plant invertase/pectin methylesterase inhibitor 35 187 IPR006501 GO:0004857
Stsc120841g00046 576 FunFam Pectinesterase 255 574 - -
Stsc120841g00046 576 Gene3D - 255 574 IPR012334 -
Stsc120841g00046 576 Pfam Pectinesterase 261 560 IPR000070 GO:0030599|GO:0042545
Stsc120841g00046 576 PANTHER PECTINESTERASE 23 564 - -
Stsc120841g00046 576 ProSitePatterns Pectinesterase signature 2. 407 416 IPR033131 -
Stsc120841g00046 576 CDD PMEI-like_3 36 193 - -
Stsc120841g00046 576 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 192 IPR035513 -
Stsc120841g00046 576 SUPERFAMILY Pectin lyase-like 257 573 IPR011050 -
Stsc120841g00046 576 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 36 191 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120841g00046 Stsc-Chr120841 282820 285090 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120841g00046 12 574 Carbohydrate Esterase AT1G02810 56.947 0.0 647
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120841g00046 K01051 - gmx:100813051 784.252