Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120841g00045 ATGTCTAAGCTTCTCAATCTCATCATTCTCTTTCTTTTACCTTTGTTCTTATTAGCTTCCATAGCTTCTTCAGACACACCTTCAACTCCAATTTCTCCCGAAAATCTTTGCAAATCCACGCCCGACCCAAAATATTGCAAATCCGTTCTCCCACCAACGAAAAACGCCAATGTCTATGACTATGGCCGGTTTTCGGTTAAAAGCTCCATTTCACAAGCCACAAAGTTCTTGGCTCTTGTTAACAAGTACCTTCAACGGAGCAATACGCTCTCTGTCCCTGCGATCCGAGCACTTCAAGATTGCAAGACGCTCGGAGAACTGAACCTGGATTTCTTGACTAGCTCGTTTCAAACGGTGAACAAGACGACGAGGTTCTTGGGGAGTTACCAGGCTGACGATATCCAGAACCTTCTTAGTGCCATTCTTACCAACCAACAAACATGCTCGGATGGACTCCAAGAAGCTTCTTCAGCTTGGAGTGTCAAGAATGGACTCAGCGTTCCACTTTCTAATGACACTAAGCTCTATAGTGTCTCTCTTGCTCTCTTCACTAAAGGGTGGGTTCCAAAGACAAAGAACAAAGTTGCAAAATCCTCGGTTCAAGTGAGTAGGAAGCAACTTGGATTCAAAAATGGCCGCATGCCTCCGATGACGATGTCAAGCGAAACCCGAGCAATCTACGAGTCGGTGAGCCGCCGGAACCTTCTAGAACCGACAGTGGGCACGCAGGTGAAGGTGAACGGCATTGTAACAGTTAGTCAAGACGGCACAGGAAACTTCACTACTATCAATGATGCCCTAGCGGCCGCACCCAACAAGTCCTCGTCCACGGACGGGTACTTCTTGATCTACGTTACCGCTGGAATTTACGACGAAATTGTGTCCATTGATAAAAAGAAGACTTATTTGATGATGATTGGAGATGGAATCAACAAAACAATCATCACTGGAAATCGAAGTGTCGTTGATGGCTGGACAACCTTTAATTCCGCCACTTTTGCCGTGGTAGGCCAAGGATTTGTGGGAGTGAACTTCACTGTTCGGAACACCGCCGGCGCCGTGAAACACCAAGCGGTGGCAGTCCGAAATGGCGCCGATCTATCCACATTCTACAGTTGCAGCTTCGAGGGTTATCAAGACACGCTTTATGCGCATTCTCTAAGACAATTCTATAGAGAATGTGACATATACGGCACCGTTGACTTTATATTTGGTAACGCTGCATCAGTGTTTCAAAATTGCAACATTTACCCTAGACTCCCAATGAGTGGACAATTCAATGCGATTACCGCTCAAGGCCGAACCGATCCAAACCAAAACACCGGAATCTCAATCCACAATTGCACGATCAAGCCGAGTGATGACCTAGCCGCGAACATGGGCGTGGCCGCGACTTACCTCGGTAGGCCGTGGAAGGAATACTCTAGGACAATTTACATGCAAACCTTCATGGATAGTGTGGTTGATCCTAAAGGGTGGCAAGAATGGGATGGTGATTTTGCATTGAGCACATTGTATTATGCTGAGTATGATAACAATGGACCTGGTTCTAACACTTCCAACAGAATCACTTGGGCTGGTTACCATGTGATTAATGCTACGGATGCATCAAATTTCACTGTCTCTAATTTCTTGCTTGGAGATGATTGGTTGCCCAACACAGGTGTCACATACACTAGTAGCTTGATATAG 1692 0.4604 MSKLLNLIILFLLPLFLLASIASSDTPSTPISPENLCKSTPDPKYCKSVLPPTKNANVYDYGRFSVKSSISQATKFLALVNKYLQRSNTLSVPAIRALQDCKTLGELNLDFLTSSFQTVNKTTRFLGSYQADDIQNLLSAILTNQQTCSDGLQEASSAWSVKNGLSVPLSNDTKLYSVSLALFTKGWVPKTKNKVAKSSVQVSRKQLGFKNGRMPPMTMSSETRAIYESVSRRNLLEPTVGTQVKVNGIVTVSQDGTGNFTTINDALAAAPNKSSSTDGYFLIYVTAGIYDEIVSIDKKKTYLMMIGDGINKTIITGNRSVVDGWTTFNSATFAVVGQGFVGVNFTVRNTAGAVKHQAVAVRNGADLSTFYSCSFEGYQDTLYAHSLRQFYRECDIYGTVDFIFGNAASVFQNCNIYPRLPMSGQFNAITAQGRTDPNQNTGISIHNCTIKPSDDLAANMGVAATYLGRPWKEYSRTIYMQTFMDSVVDPKGWQEWDGDFALSTLYYAEYDNNGPGSNTSNRITWAGYHVINATDASNFTVSNFLLGDDWLPNTGVTYTSSLI 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120841g00045 563 SUPERFAMILY Pectin lyase-like 247 559 IPR011050 -
Stsc120841g00045 563 FunFam Pectinesterase 34 185 - -
Stsc120841g00045 563 Pfam Pectinesterase 250 548 IPR000070 GO:0030599|GO:0042545
Stsc120841g00045 563 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 185 IPR035513 -
Stsc120841g00045 563 CDD PMEI-like_3 36 187 - -
Stsc120841g00045 563 Gene3D - 244 562 IPR012334 -
Stsc120841g00045 563 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 185 IPR035513 -
Stsc120841g00045 563 PANTHER PECTINESTERASE 17 552 - -
Stsc120841g00045 563 Pfam Plant invertase/pectin methylesterase inhibitor 34 182 IPR006501 GO:0004857
Stsc120841g00045 563 FunFam Pectinesterase 243 562 - -
Stsc120841g00045 563 NCBIfam pectinesterase inhibitor domain 7 184 IPR006501 GO:0004857
Stsc120841g00045 563 SMART PMEI_2 28 182 IPR006501 GO:0004857
Stsc120841g00045 563 ProSitePatterns Pectinesterase signature 2. 396 405 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120841g00045 Stsc-Chr120841 272435 275104 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120841g00045 10 563 Carbohydrate Esterase AT4G02330 61.821 0.0 718
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120841g00045 K01051 - gmx:100800971 897.886