Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120841g00043 ATGTTCATGGACTCATCATCATCACAAACCCAATCCAATTCTAACTTATATGCAAGAAACGGCATCTTCTTCCTTGTCTTCACCCTACTCCTCTTCCTCCTCCTCATCATCTCCATTTTCCTCCACACTTTCCGCCACTCCTGCTTCCCTCTCCGCCGCCGCCATCGTCGTCGTCTTCCCGCCGCCAACAAAGGCCTTCACCCTTCCCTTCTCGCTTCCCTCCCAACCTTCACACACGCTCCTTCTTCTCCTTCCGCCGGCGCCGGAGACAGCTGCGCCGTGTGCATGTCGGAGTTCGTCGCCGGCGACGAGGGCCGTGTTCTTCCCATTTGCCGCCACTCTTTTCATTCGCAATGCATAGATGCGTGGTTCGGTTCTCACTTGAGTTGCCCGCTTTGTCGTACACCGGTTCAGCCGGTTCAGCCCGGTCCGGTTGCGGTTAAACCGGAAGTGGATAAGTGGTTTCCTGAACCGATATGGTGCCCGAAGAAGAAACCGTTGAAGATGGAATTGGAATTGGAGAAATTGGAGAAGAGCAAGAATAGTTACTACATAAATATCACTCTTTAG 570 0.5263 MFMDSSSSQTQSNSNLYARNGIFFLVFTLLLFLLLIISIFLHTFRHSCFPLRRRHRRRLPAANKGLHPSLLASLPTFTHAPSSPSAGAGDSCAVCMSEFVAGDEGRVLPICRHSFHSQCIDAWFGSHLSCPLCRTPVQPVQPGPVAVKPEVDKWFPEPIWCPKKKPLKMELELEKLEKSKNSYYINITL 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120841g00043 189 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 8 141 - -
Stsc120841g00043 189 SMART ring_2 92 133 IPR001841 -
Stsc120841g00043 189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 140 IPR013083 -
Stsc120841g00043 189 ProSiteProfiles Zinc finger RING-type profile. 92 134 IPR001841 -
Stsc120841g00043 189 Pfam Ring finger domain 90 134 IPR001841 -
Stsc120841g00043 189 SUPERFAMILY RING/U-box 89 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120841g00043 Stsc-Chr120841 261768 262567 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120841g00043 20 134 C3H Transcription Factor Family AT1G76410 45.161 1.42e-26 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120841g00043 - - ahf:112728565 225.328