Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120841g00009 ATGAAGTTCTGCAAAACATACCAAAATTACATGCAAGGGCAGGAGGAGAAGCTACCTGGGCTTGAATTCAAAAAGCTGAAAAAGATTATGAAGAAATGTAGAAGTGGAGGTTGTTATTCTCCTATCATGCTCATCAACCATAATAATAATATTAATAATAATAATCCCACCATAAAATGCCCTATTCAATGCCCAGTTTGTGATGGTTCTTTCTTCCCTTCCCTTCTGAATGAATTATTAGAAGTAGTTGGATGCTTCAACCAGCGAGCACAGCATTTGCTAGAATTACATCTTTCTTCAAATTCTGGGTTCAAGAAGTACCTTCTTTGCTTGAGTAAATCCCATCATAATTCTATCACTCAAGAAGGCAAAGATCTTGTCATTTATGCACTCATAAATGCTGTCGCTACCAGAAAAATTTTAAAGAAATATGATAAGATACATGATTCAAAGCAAGGGCAATTATTCAAGTCACAAGTGCAGGCTATGCACAAGGAAATTCTTCAAAGTCCATGGCTTATTGAGCTTATGGCCTTATACATCAACACTGGAGACCCTAAATCTTCTTTGTTTGATGGATGCTGCCTCACTTTTAAGGATGGAAAACCATCACTCACTTGCCAGATTTTTAATTCCTACAAAGTTGATATTGACTTGACTTGTTCTATATGCTTGGATACTGTGTTTGATCCTGTAGCATTGACTTGTGGCCATGTTTTCTGTTACACATGTTCTTGTTCGGCTGCATCCGTAACCATTGTTGATGGACTTAAGGCGACGGATCCTAAAGAAAAGTGTCCTCTATGCCGCGAGAAAGGAGTTCATGAAGGTGGTGTGCACTTGGAAGAACTAAATATTCTGTTAGGCCAAAGATGCAAGGAGTATTGGAAGGAAAGACTTCGGATGGAGAGGGTAGAGAGGGTTAGGCAGGCCAAGGAGCACTGGGAATCAGTGTGTAGGGCAGCCATGGGAATCTAA 978 0.3957 MKFCKTYQNYMQGQEEKLPGLEFKKLKKIMKKCRSGGCYSPIMLINHNNNINNNNPTIKCPIQCPVCDGSFFPSLLNELLEVVGCFNQRAQHLLELHLSSNSGFKKYLLCLSKSHHNSITQEGKDLVIYALINAVATRKILKKYDKIHDSKQGQLFKSQVQAMHKEILQSPWLIELMALYINTGDPKSSLFDGCCLTFKDGKPSLTCQIFNSYKVDIDLTCSICLDTVFDPVALTCGHVFCYTCSCSAASVTIVDGLKATDPKEKCPLCREKGVHEGGVHLEELNILLGQRCKEYWKERLRMERVERVRQAKEHWESVCRAAMGI 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120841g00009 325 ProSiteProfiles SPX domain profile. 1 158 IPR004331 -
Stsc120841g00009 325 SMART ring_2 221 269 IPR001841 -
Stsc120841g00009 325 CDD RING-HC_BAH1-like 211 284 - -
Stsc120841g00009 325 SUPERFAMILY RING/U-box 213 272 - -
Stsc120841g00009 325 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 325 IPR033326 -
Stsc120841g00009 325 Pfam Zinc finger, C3HC4 type (RING finger) 218 272 - -
Stsc120841g00009 325 ProSiteProfiles Zinc finger RING-type profile. 221 270 IPR001841 -
Stsc120841g00009 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 205 323 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120841g00009 Stsc-Chr120841 60925 64138 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120841g00009 218 270 C3H Transcription Factor Family AT4G28270 41.379 1.08e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120841g00009 K16275 - gmx:100787904 442.58