Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120841g00007 ATGTCCTCTGATTGGATCACTTCGCTCTCATGTTCTTCAACATCATTATCACTCTCAAGTCTACCTCAATGGTTAAGATTTGTGTTCCTTTCACCATGTCCTCAGAGAGCTTTGTTTTCTGCTGTTGATGTTCTTCTCTTGTTCACCTTCACTGTGTTTGCCATAATAAAGCTTTACCAGAAGTTCTTTTCAAATGGCAACAACAACAACAGCAGCAGGATCATCACTTCCAATGGCCACAACAACAACCACCATAACAATGAGCTCAACAAGCCCCTTATCAGCAACAACAGGAGTTTCACCAAAACAGCAACCTTATGGTTCAAACTAACTCTCATTGCAACATCTGTTTTGGCTGCACTTTTCATTGTTGCTTCCATCTTGGTGTTCTGCAGTTCCATGATTCAGTCTCCATGGAAGGTGCTTGATGGAGTGTTTTGGTTGGTTCAGGCCATAACACAGATTGTGCTTGCAATCTTGATCATCCATGAGAAGAGATTTGAAGCTGTTAATCACCCTGTGTCACTTAGAATCTATTGGATTGCAAGTTTCATTGTTGTTTCTTTGTTTACAGCTTCTGGGGTTATACGTTTCTCCACTTTAGATGTGGACACTCTTGCAGTGGATGACATAGTTTCCTTCATTTCTCTCCCTATATCACTTTTTCTTCTCTGTGTTGGGATCAAAGGGTCAACTGGGATTAAGTCCAGTGAAGAATCACAGGTTCTTCTTAATGGTGAAAACAAAGTATCAGAGACCATATCAAATGTAACTGGTTTCGCTTCGGCTTCTATTATATCCAAGGCCTTTTGGATTTGGATAAACCCTTTGTTGAATAAAGGGTATAAGTCACCTCTTAAGATTGATGAAATTCCATCACTTTCTCCTCAGCATAGAGCTGAGAGGATGTCTGTAATATTCGAATCGAAATGGCCTAAATCGCATGAGAGATCGAAGCATCCAGTTCGGACCACATTAGTCCGTTGTTTCTGGAGAGAGATCCTATTCACTGCTTTCCTTGCTGTTGTGAGACTATGTAAGCTTGGAATGCTTATAAGGTGCACCCTCATCACTTCTCTGTACAAAAAGGGGCTGAAGCTAACTTGCTCAGCAAGGCAAGACCATGGTGTTGGTCCAATTGTGAATTACATGGCTGTGGACACTCAGCAACTCTCTGACATGATGCTGCAGCTTCACGCCGTGTGGATGATGCCATTCCAAGTTGGCATAGGCTTGTTCTTGCTCTACAATTGTTTAGGTGCTTCAGTGGTCACTGCCCTGCTTGGACTTCTTGCTGTTCTGATTTTCATTGTGATAACCACTAGGAACAACAAGCAATACCAGTTTAAGGCCATGATGAATCGCGATTCACGTATGAAGGCTGTCAATGAGATGCTTAATTACATGCGTGTGATCAAGTTCCAGGCCTGGGAAGATCATTTCAATGACAGGATCTTGAAATTCCGTGGCTCCGAGTTCGGGTGGCTTTCAAAGTTTTTGTACTCAATTTGTGGCAACATCATTGTGTTGTGGAGCACTCCTTTAGTCATATCCACGCTCACATTCGGCACAGCTATTCTTCTTGGAGTTCCACTAGATGCAGGCACGGTTTTCACCACTACAACCGTGTTTAAGATCCTGCAGGAGCCTCTAAGGACCTTCCCACAATCCATGATTTCACTTTCACAGGCATTGGTGTCACTTGGAAGGTTGGATAGGTACATGTCTAGTAGGGAACTGGCAGAAGATTCGGTCGAAAGAGACGAAGGGTGCAACGGAAACATTGCTGTGGAGGTTAGAGATGGAACATTTAGCTGGGATGATGATGCCAAAGAGCAAGACTTGAAGAACATCAATTTGGAGATCAACAAGGGAGAACTCACAGCTATTGTTGGGACTGTAGGGTCTGGAAAATCTTCTCTCCTTGCATCAATTCTTGGTGAGATGCACAGAGTTTCCGGAAAGGTTAAAGTTTGTGGGAGTGTTGCCTATGTTGCACAAACAGCTTGGATTCAAAATGGTACAATTGAAGAAAACATTCGCTTTGGTTTACCAATGGACAGACAGAAGTACGATGAAGTCATCAAGGTTTGTTGCTTGGAGAAGGACTTGGAAATGATGGACCATGGAGATCAGACAGAAATCGGAGAGCGTGGCATCAACCTGAGCGGTGGCCAAAAGCAGCGCATACAACTCGCCAGGGCCGTGTATCAAGACTCTGATGTTTATCTTCTTGATGATGTCTTCAGTGCTGTTGATGCACATACTGGCTCTGAAATATTTAAGGAATGTGTGAGAGGAGTTCTAAAAGGCAAGACCATAATTCTTGTAACTCATCAAGTGGACTTCTTACACAATGTAGATCTTATAATGGTGATGAGGGATGGAACTATAGTCCAATCAGGAAAGTACAATGATCTACTTGATTCTGGACTAGATTTTGGTGCTTTGGTAGCTGCACACGAAACCTCCATGGAGCTAGTTGAACAAGGCGCAGCAAATTCTGGCGAAAATTCGAACAAACCATTGAAATCTCCAAAGGGTGTTTCCAATCACAGAGAGGCCAATGGTGAAAGCAATTCTCATGATGCACCAAATTCTAAGAAGGAAGGTTCTAAACTCATCAAAGAAGAGGAGAGGGAAACTGGGAAAGTTAGCTTGCATATCTATAAACTCTACTGCACTGAGGCTTTTGGTTGGTGGGGCATTATTGCAGTGATTTTTCTCTCTGTGGTGTGGCAAGCATCTATGATGGTAAGTGATTATTGGCTGGCGTATGAAACCTCGGCTGAGCGCGCAGAATTCTTTGATGCCTCTAAGTTCATCACAGTGTATGGAATTATTGTAGCAGTTTCAATTGTTTTGATAGTGCTAAGGTCTTACTCTGTCACAATCTTGGGACTAAGGACAGCACAGATTTTCTTCTCACAAATTCTTCATAGCATCTTGCATGCTCCCATGTCTTTCTTCGACACCACTCCATCCGGAAGAATTCTTAGTAGAGCATCCACTGATCAGACCAATGTTGATATTTTTATCCCCTTGTTCCTCCAATTTGTTGTGGCAATGTACATTACAGTGATCAGCATCTTCATCATCACATGTCAAAATTCTTGGCCAACAGTCTTCTTGCTACTTCCTCTTCTTTGGCTGAACATCTGGTACCGGGGCTATTTTCTATCTACCTCTCGCGAATTAACTCGCCTTGATTCGATTACGAAGGCACCTGTGATTCATCATTTCTCTGAAAGCATTTCTGGGGTCATGACGATTCGAGCATTCAAAAAGCAGAAGGAGTTTTGTGATGAAAATGTTAACAGGGTGAATGCTAATCTGAGAATGGATTTCCATAACTTCAGCTCCAATGCATGGTTAGGCTTCCGATTGGAGTTGCTTGGAAGCTTAGTTTTTTGCATCTCTGCTCTGTTCATGATCATGTTACCAAGCAGTGTCATAAAGCCAGAAAATGTTGGTTTGTCTCTTTCATATGGATTGTCGTTGAACTCGGTATTGTTTTGGGCAATCTACATGAGCTGTTTCATTGAGAACAAAATGGTATCCGTTGAGAGGATAAAGCAGTTCACAAACATTCCTTCAGAAGCAGCGTGGAACATTAAGGATCGGTTGCCTCCTTCGAATTGGCCTGGTCAAGGAAATGTTGATATCAAAGACTTGCAGGTGAGATATAGACCAAACACTCCTTTGGTTCTTAAAGGCATAACTTTAAGGATTAATGGAGGAGAAAAGGTTGGTGTGGTTGGTAGAACTGGGAGTGGAAAATCAACTTTGATTCAAGTGTTCTTTAGGCTGGTTGAACCTACAGGAGGGAAAATAATCATTGATGGCATTGACATATCGGCATTAGGGCTTCATGATCTTCGATCAAGGTTCGGTATCATCCCTCAGGAGCCTGTCCTTTTTGAAGGCACAGTCAGAAGCAACATTGATCCAACTGGACAATATACAGATGAAGAGATTTGGAAGAGTTTGGAACGTTGTCAACTAAAAGAAGCAGTGGCTTCGAAGCCCGAGAAACTTGAATCTTTAGTGGTTGATAATGGAGATAACTGGAGTGTGGGGCAGAGGCAGTTGCTTTGTTTAGGGAGGGTGATGCTTAAGCAAAGCAGGCTCTTGTTCATGGATGAAGCAACAGCTTCTGTTGATTCTCAAACTGATGCTGTGATTCAGAGGATCATCAGAGAAGACTTCGCGGCGCGGACCATAATCAGCATTGCTCATAGAATACCAACTGTTATGGACTGTGATAGAGTCCTAGTTGTAGATGCTGGGCTTGCTAAGGAATTTGACACACCCGCCAAGTTGATTCAGAGGCCATCACTCTTTGGAGCATTAGTTCAAGAATATGCCAACCGTTCCAGTGGACTATAA 4389 0.4274 MSSDWITSLSCSSTSLSLSSLPQWLRFVFLSPCPQRALFSAVDVLLLFTFTVFAIIKLYQKFFSNGNNNNSSRIITSNGHNNNHHNNELNKPLISNNRSFTKTATLWFKLTLIATSVLAALFIVASILVFCSSMIQSPWKVLDGVFWLVQAITQIVLAILIIHEKRFEAVNHPVSLRIYWIASFIVVSLFTASGVIRFSTLDVDTLAVDDIVSFISLPISLFLLCVGIKGSTGIKSSEESQVLLNGENKVSETISNVTGFASASIISKAFWIWINPLLNKGYKSPLKIDEIPSLSPQHRAERMSVIFESKWPKSHERSKHPVRTTLVRCFWREILFTAFLAVVRLCKLGMLIRCTLITSLYKKGLKLTCSARQDHGVGPIVNYMAVDTQQLSDMMLQLHAVWMMPFQVGIGLFLLYNCLGASVVTALLGLLAVLIFIVITTRNNKQYQFKAMMNRDSRMKAVNEMLNYMRVIKFQAWEDHFNDRILKFRGSEFGWLSKFLYSICGNIIVLWSTPLVISTLTFGTAILLGVPLDAGTVFTTTTVFKILQEPLRTFPQSMISLSQALVSLGRLDRYMSSRELAEDSVERDEGCNGNIAVEVRDGTFSWDDDAKEQDLKNINLEINKGELTAIVGTVGSGKSSLLASILGEMHRVSGKVKVCGSVAYVAQTAWIQNGTIEENIRFGLPMDRQKYDEVIKVCCLEKDLEMMDHGDQTEIGERGINLSGGQKQRIQLARAVYQDSDVYLLDDVFSAVDAHTGSEIFKECVRGVLKGKTIILVTHQVDFLHNVDLIMVMRDGTIVQSGKYNDLLDSGLDFGALVAAHETSMELVEQGAANSGENSNKPLKSPKGVSNHREANGESNSHDAPNSKKEGSKLIKEEERETGKVSLHIYKLYCTEAFGWWGIIAVIFLSVVWQASMMVSDYWLAYETSAERAEFFDASKFITVYGIIVAVSIVLIVLRSYSVTILGLRTAQIFFSQILHSILHAPMSFFDTTPSGRILSRASTDQTNVDIFIPLFLQFVVAMYITVISIFIITCQNSWPTVFLLLPLLWLNIWYRGYFLSTSRELTRLDSITKAPVIHHFSESISGVMTIRAFKKQKEFCDENVNRVNANLRMDFHNFSSNAWLGFRLELLGSLVFCISALFMIMLPSSVIKPENVGLSLSYGLSLNSVLFWAIYMSCFIENKMVSVERIKQFTNIPSEAAWNIKDRLPPSNWPGQGNVDIKDLQVRYRPNTPLVLKGITLRINGGEKVGVVGRTGSGKSTLIQVFFRLVEPTGGKIIIDGIDISALGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTGQYTDEEIWKSLERCQLKEAVASKPEKLESLVVDNGDNWSVGQRQLLCLGRVMLKQSRLLFMDEATASVDSQTDAVIQRIIREDFAARTIISIAHRIPTVMDCDRVLVVDAGLAKEFDTPAKLIQRPSLFGALVQEYANRSSGL 1462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120841g00007 1462 MobiDBLite consensus disorder prediction 829 877 - -
Stsc120841g00007 1462 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 904 1183 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc120841g00007 1462 FunFam ABC transporter C family member 5 866 1201 - -
Stsc120841g00007 1462 Pfam ABC transporter 1237 1385 IPR003439 GO:0005524
Stsc120841g00007 1462 SMART AAA_5 1246 1430 IPR003593 GO:0016887
Stsc120841g00007 1462 SMART AAA_5 624 797 IPR003593 GO:0016887
Stsc120841g00007 1462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 594 815 IPR027417 -
Stsc120841g00007 1462 Gene3D - 1203 1452 IPR027417 -
Stsc120841g00007 1462 Gene3D ABC transporter type 1, transmembrane domain 866 1201 IPR036640 GO:0005524|GO:0016020
Stsc120841g00007 1462 SUPERFAMILY ABC transporter transmembrane region 900 1200 IPR036640 GO:0005524|GO:0016020
Stsc120841g00007 1462 Pfam ABC transporter transmembrane region 336 551 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc120841g00007 1462 Pfam ABC transporter transmembrane region 903 1156 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc120841g00007 1462 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 597 820 IPR003439 GO:0005524
Stsc120841g00007 1462 Gene3D - 574 842 IPR027417 -
Stsc120841g00007 1462 CDD ABC_6TM_ABCC_D1 334 571 IPR044746 GO:0140359
Stsc120841g00007 1462 MobiDBLite consensus disorder prediction 856 877 - -
Stsc120841g00007 1462 FunFam ABC transporter C family member 3 1203 1454 - -
Stsc120841g00007 1462 MobiDBLite consensus disorder prediction 829 846 - -
Stsc120841g00007 1462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1213 1453 IPR027417 -
Stsc120841g00007 1462 CDD ABCC_MRP_domain1 597 797 - -
Stsc120841g00007 1462 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1220 1454 IPR003439 GO:0005524
Stsc120841g00007 1462 FunFam ABC transporter C family member 4 580 839 - -
Stsc120841g00007 1462 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 335 563 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc120841g00007 1462 Pfam ABC transporter 615 748 IPR003439 GO:0005524
Stsc120841g00007 1462 ProSitePatterns ABC transporters family signature. 722 736 IPR017871 GO:0005524|GO:0016887
Stsc120841g00007 1462 CDD ABC_6TM_ABCC_D2 903 1195 IPR044726 GO:0140359
Stsc120841g00007 1462 Gene3D ABC transporter type 1, transmembrane domain 328 573 IPR036640 GO:0005524|GO:0016020
Stsc120841g00007 1462 CDD ABCC_MRP_domain2 1218 1438 - -
Stsc120841g00007 1462 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 261 343 - -
Stsc120841g00007 1462 FunFam ABC transporter C family member 10 343 579 - -
Stsc120841g00007 1462 SUPERFAMILY ABC transporter transmembrane region 336 579 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120841g00007 Stsc-Chr120841 53269 59725 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120841g00007 597 813 Calmodulin-binding Proteins AT2G36910 31.330 7.03e-25 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120841g00007 - K05666 gmx:100793361 2355.48