Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120840g00044 ATGTACCATCATCATCAAGGAGGGAAGAACATCCATTCTTCAAGTTCAAGAATGGCAATATCTTCCGAGAGGCACATGTTCCTTCAAGCTGCTGCTGCTGGAAATGGGTCCGGGGGTGAGTCTGGGCTTGTGCTCTCCACAGATGCCAAGCCTAGACTCAAATGGACACCAGATCTTCATGCCAGGTTTATAGAAGCAGTTCATCAGCTAGGTGGAGCTGACAAGGCAACTCCAAAAACAGTGATGAAACTCATGGGAATTTCAGGGCTTACCTTATATCATCTGAAGAGCCATCTTCAGAAGTACAGATTGAGCAAGAATCTGCATGGACAAAGTAATAACAACGTGACACACAAAATTAGTGCAAGTAGTGCAACTAGTACGGGAGAAAGGCCCTCTGAAAGCAACGGCACTCACAATCATATGAACAACAACACTTTAAACACTGTTGGATCTTCTCCTCAGTCGTCTAATAACAAAGATTTACACATAAGTGAGGCACTTCAGATGCAGATAGAGGTGCAAAGAAGGCTAAATGAACAACTAGAGGTACAAAGACACATGCAGGTGAGGATAGAGGCACAAGGGAAGTACCTGCAAGCAGTGCTGGAGAAAGCTCAAGAAACACTTGGGAGACAGGGTTCGGGAGTAGTAGGACTTGAAGCTGCAAAAGTCCAACTCTCTGAGCTTGTTTCCAAAGTTTCCTCTCAGTGCTTGGAACTTCAAACCACCAACCACCACTTACCAAATAATAACAACGACTGTTCCATGGACAGTAACAGTTGCCTCACATCAGAACAAGAGAATCTAAGGCGGCCCTTCAATAGTGGCCACCAGCACCAGCACCACCATGCATTCATGTTGGAGAGAAACAACAATATAGCTAGCGCCACCACCACCAACTTTCTGACACCATTAGGGAGCAAGAACAATAATAATAGTAAGAGTGGTGCAGAAAGAAGAAGCTATAATGTTGTGGAGAGAAGTAGTCCAAGTAACTTGTGTATGAGCATTGGACTTGAAAGGGAGACAGAAGCAGCAGCGATGATGATGAGTAGTGAGAAAGGTTCTCATCATCATCATCATCATCATCACCGAAACTATAGCAGGTTGCCACCTTGTTCTTCTTCTTCCTCTTCTTACTTTGCAGCAGCAAGGCTGGACCTTAACGCACGTGATCAGGATCAAAGTCATGAAGCAAGTGGTACAACTAATTGTAAGCAGCTGGACTTGAATGGATTCAGTTGGAGTTAG 1254 0.4458 MYHHHQGGKNIHSSSSRMAISSERHMFLQAAAAGNGSGGESGLVLSTDAKPRLKWTPDLHARFIEAVHQLGGADKATPKTVMKLMGISGLTLYHLKSHLQKYRLSKNLHGQSNNNVTHKISASSATSTGERPSESNGTHNHMNNNTLNTVGSSPQSSNNKDLHISEALQMQIEVQRRLNEQLEVQRHMQVRIEAQGKYLQAVLEKAQETLGRQGSGVVGLEAAKVQLSELVSKVSSQCLELQTTNHHLPNNNNDCSMDSNSCLTSEQENLRRPFNSGHQHQHHHAFMLERNNNIASATTTNFLTPLGSKNNNNSKSGAERRSYNVVERSSPSNLCMSIGLERETEAAAMMMSSEKGSHHHHHHHHRNYSRLPPCSSSSSSYFAAARLDLNARDQDQSHEASGTTNCKQLDLNGFSWS 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120840g00044 417 Pfam Myb-like DNA-binding domain 52 103 IPR001005 -
Stsc120840g00044 417 Gene3D - 49 107 - -
Stsc120840g00044 417 MobiDBLite consensus disorder prediction 350 372 - -
Stsc120840g00044 417 NCBIfam myb-like DNA-binding domain, SHAQKYF class 50 105 IPR006447 GO:0003677
Stsc120840g00044 417 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 13 331 IPR044848 GO:0003700
Stsc120840g00044 417 FunFam Myb family transcription factor 49 107 - -
Stsc120840g00044 417 Coils Coil 165 185 - -
Stsc120840g00044 417 SUPERFAMILY Homeodomain-like 49 105 IPR009057 -
Stsc120840g00044 417 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 47 107 IPR017930 -
Stsc120840g00044 417 Pfam MYB-CC type transfactor, LHEQLE motif 163 209 IPR025756 -
Stsc120840g00044 417 MobiDBLite consensus disorder prediction 120 160 - -
Stsc120840g00044 417 MobiDBLite consensus disorder prediction 301 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120840g00044 Stsc-Chr120840 290945 293652 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120840g00044 43 238 G2-like Transcription Factor Family AT1G69580 55.102 7.94e-62 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc120840g00044 Myb_DNA-binding 1.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120840g00044 - - gmx:100810396 409.838