LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc120840g00041	ATGCTTACTCCAGAGCAAGCTTATCAACTTCAAGAACATGAATCAGTGGTGTCAGTTTTTGAGAGTAAACTGAATAGGCTCCATACAACACATTCTTGGGATTTTCTTGGATTAAACACTGCCTACACAGGAAGCCATGTGGCAATGGATTGGGCTTCAGATGTTATTGTTGGTGTCGTTGACTCAGGTGTTTGGCCAGAATCAGAAAGCTTCACAGATTATGGATTAGGTCCTGTGCCTGAGAGATTCAAGGGAGAGTGTGTCACTGGTGATAATTTCACACTAGCCAATTGCAATAGGAAAATTATTGGTGCCAGGTTCTATTCAAAAGGTTTTGAAGCAGAAGTTGGTCCATTGGAAGACGTGGTTAACAGGCAATATTTCCGATCAGCACGAGACAGTGATGGACATGGAAGTCACACAGCCTCGACCATAGCAGGATCCATTGTTGCTAATGCCAGTTTACTTGGCATGGGCAGAGGAAGTGCTCGAGGTGGCGCACCAAATGCAAGGCTTGCCATCTACAAGGCCTGTTGGTTCGGATTCTGCAGCGATGCAGATATCCTGTCTGCCATGGATGATGCCATTCATGATGGTGTTGACATTGTGTCCCTCTCCCTTGGCCCTTCACCTCCACAGCCCATTTACTTTGAGGATGCAGTCAGTGTTGGTGCATTCCATGCTTTCCAAAACGGCATTCTTGTTTCTGCTTCCGCTGGAAACTCCATTTTTCCAGGTACTGCCTGCAATGTTGCTCCTTGGATTCTCACTGTTGCTGCTAGCACCATCGATAGACAATTCAGATCAGATATCTACCTTGGAAATTCAAAAGTTTTAAAGGGTTTGTCTTTGAATCCAATAAGAATGGACAACTGGCATGGTTTGATATATGCAAGTGCAGCCGCAGCGGCAGGAGTTCCTCCAACAAATGCAAGCTTCTGTCAAAACAATACTCTAGATCCTAGCTTAATAAAAGACAAAATTGTGATCTGTACAATTGAGAAAGTCACTGAGAACCGAAGATTGAAGGCTGCGGTAATAAAGGAAGGCGGAGGAGTTGGAATGATACTTATTGATCACAATGCCAGAGATGTTGGGTTTCAGTTTGTGATCCCAACCACTCTCATTGGTCAGGATGCTGTAGAGGACCTTCAATCATATATCAATACAGAGAGGAATCCTGTTGCTAGAATATATCCGACAGTAACTGTTCTTGATACCAAACCTGCACCAGAAGTGGCAGCTTTTTCCTCTATGGGGCCAAATCCTGATATCACAGCACCCGGGGTAAATATTCTGGCAGCATGGTCTCCGGTAGCAACCCAAGACACGGTGGAACAACAATCCGTGGACTATAACATCATTTCAGGAACATCAATGTCTTGCCCACACATATCTGCCATTGCTGCAATTATAAAGTCTCACTATCCTTCTTGGAGTCCTGCATCCATAATGTCTGCAATTATGACAACATCAACTGTGATGGACAATACTCGTCGTGTCATTGGAAGAGATCCCAATGATACTCAAACAACACCCTTTGACTATGGATCTGGCCATGTTAAACCACTTGCATCACTAAATCCAGGACTAGTATATGATTTCAACACTCAAGATGTGGTCAAGTTTCTATGTAGCAATGGAGCATCACCAGCACAACTCAAGAACCTTACTATTATTGGAGGAGAACAAGCGCTGCAATGTCAGAATTATCCTGAGCCTAGAGCTTCCTACAACTTGAACTACCCTTCAATTGGTGTGTCCAAATTGAACGGCAGTTTAACAGTGTATCGCACGGTTACCTTCTCCGGCAAGGAAGCAACAGCGTACTATGCAAGTGTTGAAAATCCAGAAGGTGTGAATATTAGAGTAAGACCATCTGAACTGAGGTTTGTGAAGGAAGGGGAGAAAGCAAGTTTCAGGATTGATTTGAAGGGTTTGAAGAATAGCAATGGTAATTTTGTGTTCGGTGGCATCACATGGAACAATGGCATACAGAGGGTTAGGACTCCCATTGCTGTTAATGTAATCTCTACTTAG	2040	0.4377	MLTPEQAYQLQEHESVVSVFESKLNRLHTTHSWDFLGLNTAYTGSHVAMDWASDVIVGVVDSGVWPESESFTDYGLGPVPERFKGECVTGDNFTLANCNRKIIGARFYSKGFEAEVGPLEDVVNRQYFRSARDSDGHGSHTASTIAGSIVANASLLGMGRGSARGGAPNARLAIYKACWFGFCSDADILSAMDDAIHDGVDIVSLSLGPSPPQPIYFEDAVSVGAFHAFQNGILVSASAGNSIFPGTACNVAPWILTVAASTIDRQFRSDIYLGNSKVLKGLSLNPIRMDNWHGLIYASAAAAAGVPPTNASFCQNNTLDPSLIKDKIVICTIEKVTENRRLKAAVIKEGGGVGMILIDHNARDVGFQFVIPTTLIGQDAVEDLQSYINTERNPVARIYPTVTVLDTKPAPEVAAFSSMGPNPDITAPGVNILAAWSPVATQDTVEQQSVDYNIISGTSMSCPHISAIAAIIKSHYPSWSPASIMSAIMTTSTVMDNTRRVIGRDPNDTQTTPFDYGSGHVKPLASLNPGLVYDFNTQDVVKFLCSNGASPAQLKNLTIIGGEQALQCQNYPEPRASYNLNYPSIGVSKLNGSLTVYRTVTFSGKEATAYYASVENPEGVNIRVRPSELRFVKEGEKASFRIDLKGLKNSNGNFVFGGITWNNGIQRVRTPIAVNVIST	679

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc120840g00041	679	PRINTS	Subtilisin serine protease family (S8) signature	133	146	IPR015500	-
	Stsc120840g00041	679	PRINTS	Subtilisin serine protease family (S8) signature	456	472	IPR015500	-
	Stsc120840g00041	679	PRINTS	Subtilisin serine protease family (S8) signature	52	71	IPR015500	-
	Stsc120840g00041	679	Gene3D	-	544	677	-	-
	Stsc120840g00041	679	Pfam	Fibronectin type-III domain	579	674	IPR041469	-
	Stsc120840g00041	679	FunFam	Subtilisin-like protease SBT1.5	54	277	-	-
	Stsc120840g00041	679	ProSiteProfiles	Serine proteases, subtilase domain profile.	32	527	-	-
	Stsc120840g00041	679	CDD	Peptidases_S8_3	27	493	IPR034197	-
	Stsc120840g00041	679	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	1	674	IPR045051	-
	Stsc120840g00041	679	ProSitePatterns	Serine proteases, subtilase family, serine active site.	457	467	IPR023828	-
	Stsc120840g00041	679	SUPERFAMILY	Subtilisin-like	27	531	IPR036852	GO:0004252\|GO:0006508
	Stsc120840g00041	679	Gene3D	-	264	405	-	-
	Stsc120840g00041	679	CDD	PA_subtilisin_like	270	398	-	-
	Stsc120840g00041	679	Pfam	PA domain	313	384	IPR003137	-
	Stsc120840g00041	679	Gene3D	Peptidase S8/S53 domain	54	539	IPR036852	GO:0004252\|GO:0006508
	Stsc120840g00041	679	Pfam	Subtilase family	53	498	IPR000209	GO:0006508\|GO:0008236

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc120840g00041	Stsc-Chr120840	276954	279742	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc120840g00041	2	676	Subtilisin-like Serine Gene Family	AT2G04160	42.756	1.71e-173	513

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc120840g00041	-		-	gmx:100792672	1036.94