Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120840g00033 ATGGTTCGCTTTGCAAAGGAAAAGCCTCAGACAATGGCTTCCTATTCTGTTTCTGATGCGGTGGCAACGTATTACTTATATACAACTTATGTCCATCCCTTTATTTTCTCCCTTGCTACTATTATACCCATGTCACCAGATGAAGTCTTGCGCAAAGGCAGTGGGACCCTCTGTGAAATGTTGCTCATGGTTCAGGCATACAAAGCGAATGTTATATGTCCTAACAAACACCAATCTGATCCAGAGAAGTTTTATAACAATCATCTTCTTGAGAGTGAGACATACATAGGTGGCCATGTAGAATGCCTAGAAAGTGGTGTTTTCAGATCTGATATTCCAACTAGTTTTACACTGGAGTCATCTGCCTATGAGCAATTGATCAACAATCTTGATAGAGATCTACAGTATGCTATAACAGTAGAGGGTAAAATGGATTTGGAATCTGTCTCTAATTATGATGAAGTAAAGACTGCTATCATGGAAAAGCTTTCAAAATTACGAGATGCTCCAATACATGAAGAATGCCCCCTCATTTATCATTTAGATGTAGCTGCCATGTATCCAAACATAATTTTGACAAACCGACTTCAGCCACCGTCAATTGTTTCAGATGAGGTTTGCACTGCATGTGATTTCAACCGTCCTGGAAAGACATGTCTACGCAAACTTCAGTGGGTTTGGCTTGGAGAAACATTCATGGCAAAGAAAAGTGACTATTATTATATAAAGAAGCAGATTGAGTCAGATTTTGTTGATGGTGCTAATGCAAGGTTATCAAAGTCTTTTCTTGACCTGCCCAAGGCAGAGCAACAATTAAGGCTGAAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCACAGGCATACAAGCGTGTTCTTGACAAACCAGTTACAGAACTACGTGAAGCAGGAATCTGCATGCGTGAAAATCCATTTTATGTTGACACTGTTCGCAGTTTCCGAGACAGAAGATATGAATATAAAGGCCTTAATAAGGTTTGGAAGGGAAAACTGTCTGAAGCCAAGGCCAGTGGAAATCCTATGAAGATCCAGGAAGCACAAGTATGA 1101 0.3778 MVRFAKEKPQTMASYSVSDAVATYYLYTTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKFYNNHLLESETYIGGHVECLESGVFRSDIPTSFTLESSAYEQLINNLDRDLQYAITVEGKMDLESVSNYDEVKTAIMEKLSKLRDAPIHEECPLIYHLDVAAMYPNIILTNRLQPPSIVSDEVCTACDFNRPGKTCLRKLQWVWLGETFMAKKSDYYYIKKQIESDFVDGANARLSKSFLDLPKAEQQLRLKXXXXXXXXXXXXXXXXXXXXNSQAYKRVLDKPVTELREAGICMRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNPMKIQEAQV 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120840g00033 366 Coils Coil 296 298 - -
Stsc120840g00033 366 Gene3D - 1 90 IPR036397 GO:0003676
Stsc120840g00033 366 Coils Coil 267 275 - -
Stsc120840g00033 366 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 1 365 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Stsc120840g00033 366 SUPERFAMILY Ribonuclease H-like 6 74 IPR012337 -
Stsc120840g00033 366 SUPERFAMILY DNA/RNA polymerases 53 347 IPR043502 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120840g00033 Stsc-Chr120840 215474 219182 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120840g00033 1 365 Core DNA Replication Machinery Family AT1G08260 80.328 0.0 604
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120840g00033 K02324 - cave:132163250 620.928