LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc120840g00033	ATGGTTCGCTTTGCAAAGGAAAAGCCTCAGACAATGGCTTCCTATTCTGTTTCTGATGCGGTGGCAACGTATTACTTATATACAACTTATGTCCATCCCTTTATTTTCTCCCTTGCTACTATTATACCCATGTCACCAGATGAAGTCTTGCGCAAAGGCAGTGGGACCCTCTGTGAAATGTTGCTCATGGTTCAGGCATACAAAGCGAATGTTATATGTCCTAACAAACACCAATCTGATCCAGAGAAGTTTTATAACAATCATCTTCTTGAGAGTGAGACATACATAGGTGGCCATGTAGAATGCCTAGAAAGTGGTGTTTTCAGATCTGATATTCCAACTAGTTTTACACTGGAGTCATCTGCCTATGAGCAATTGATCAACAATCTTGATAGAGATCTACAGTATGCTATAACAGTAGAGGGTAAAATGGATTTGGAATCTGTCTCTAATTATGATGAAGTAAAGACTGCTATCATGGAAAAGCTTTCAAAATTACGAGATGCTCCAATACATGAAGAATGCCCCCTCATTTATCATTTAGATGTAGCTGCCATGTATCCAAACATAATTTTGACAAACCGACTTCAGCCACCGTCAATTGTTTCAGATGAGGTTTGCACTGCATGTGATTTCAACCGTCCTGGAAAGACATGTCTACGCAAACTTCAGTGGGTTTGGCTTGGAGAAACATTCATGGCAAAGAAAAGTGACTATTATTATATAAAGAAGCAGATTGAGTCAGATTTTGTTGATGGTGCTAATGCAAGGTTATCAAAGTCTTTTCTTGACCTGCCCAAGGCAGAGCAACAATTAAGGCTGAAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCACAGGCATACAAGCGTGTTCTTGACAAACCAGTTACAGAACTACGTGAAGCAGGAATCTGCATGCGTGAAAATCCATTTTATGTTGACACTGTTCGCAGTTTCCGAGACAGAAGATATGAATATAAAGGCCTTAATAAGGTTTGGAAGGGAAAACTGTCTGAAGCCAAGGCCAGTGGAAATCCTATGAAGATCCAGGAAGCACAAGTATGA	1101	0.3778	MVRFAKEKPQTMASYSVSDAVATYYLYTTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKFYNNHLLESETYIGGHVECLESGVFRSDIPTSFTLESSAYEQLINNLDRDLQYAITVEGKMDLESVSNYDEVKTAIMEKLSKLRDAPIHEECPLIYHLDVAAMYPNIILTNRLQPPSIVSDEVCTACDFNRPGKTCLRKLQWVWLGETFMAKKSDYYYIKKQIESDFVDGANARLSKSFLDLPKAEQQLRLKXXXXXXXXXXXXXXXXXXXXNSQAYKRVLDKPVTELREAGICMRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNPMKIQEAQV	366

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc120840g00033	366	Coils	Coil	296	298	-	-
	Stsc120840g00033	366	Gene3D	-	1	90	IPR036397	GO:0003676
	Stsc120840g00033	366	Coils	Coil	267	275	-	-
	Stsc120840g00033	366	PANTHER	DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A	1	365	IPR029703	GO:0003677\|GO:0003887\|GO:0006260\|GO:0006281\|GO:0008622
	Stsc120840g00033	366	SUPERFAMILY	Ribonuclease H-like	6	74	IPR012337	-
	Stsc120840g00033	366	SUPERFAMILY	DNA/RNA polymerases	53	347	IPR043502	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc120840g00033	Stsc-Chr120840	215474	219182	Dispersed/Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc120840g00033	1	365	Core DNA Replication Machinery Family	AT1G08260	80.328	0.0	604

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc120840g00033	K02324		-	cave:132163250	620.928

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