Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120840g00032 ATGAGCAAGTCATTAGCTGATTACGGTGAGCAGAAATCTTGTGCTGTCACCACTGCTAAACGTCTTGCCGACTTTCTTGGTGATACAATGGTCAAAGATAAAGGTCTTCGATGTCAGTACATAGTAGCAAGTGAACCTAAGGGAACACCTGTAAGCGAGCGTGCTATTCCTGTTGCAATATTTGAAACAAAAGCTGAGGTAATGAAGTACTATGTTCGAAGATGGTGCAAGGTCTCATCAGATGTTGGTATTAGATCCATAATTGACTGGTCGTACTACAAGCAGCGGCTTTCTTCAGCAATTCAAAAAATTGTCACAATTCCTGCTGCCATGCAAAAGATCACAAATCCTGTTCCTCGAGTAGCTCATCCGGATTGGTTGCATAAAAAGGTTCGTGAAAAGGAGGACAAGTTTCGTCAACTAAAATTGGTTGATTTTAACTCAATGAGAAGGGATGATCACTCAAAAAAGAACAGTGACTCTAATGGTGTCAGCCTTATGGCAGATGAAGAGACTGTAATTGACTTGGAGGATTTTGGAAACAAGGCCAGGAATTTGCAAAGTGGTCCTAGACCAATTATACGGCATTATAAAGCTAATAATGAAGGAATTGGAAATTCTGACCCACAACATATTGATAATAGCAGCAAGGATGAGTCACTTTCACTTATTCAACAAAAGGAAATATCATCTGTAAATGTTGACAGAAATGATGATTATCAAGGATGGCTTCAAATAAAGAAGAGAAAGTGGAAAAGTATCCTGGAAAAGAGAAAAAAGCGAAGATTGGAGAATTCAAAGAAATCTGATGGTGGAAATGGTGTTCTTGAACAAATGAATGGTACCACTGGCAGAACAAATATCAGTTCATATTTCAGAACGAATGAAGTAGCCCTCAAGCGGTCCCACTGGCAGATAATACAGCTACTTCAGAGCTCACACATAGGCCAATTTTTTGCCTGGGTAGTTGTTGATGGGATTATGCTTAAGATTCCTGTTTCTGTTCCTAGAGTCTTTTACCTTAACTCAAGGTCACCAGTTACTGAAGAATTTCTTGGCAAAAGTGTCAAGAAGACACTTCCTCATGGAAGGCAAAGTTATAATCTGTATGAGGTTTCAATTGATGAAGTTCAATTTAGGGAAGCAAGCAAAAAACTTGCAGCTCTTCTAGCAGATCCTGATGTTGAGGTCAACATACTTAGGAATATATGA 1212 0.3911 MSKSLADYGEQKSCAVTTAKRLADFLGDTMVKDKGLRCQYIVASEPKGTPVSERAIPVAIFETKAEVMKYYVRRWCKVSSDVGIRSIIDWSYYKQRLSSAIQKIVTIPAAMQKITNPVPRVAHPDWLHKKVREKEDKFRQLKLVDFNSMRRDDHSKKNSDSNGVSLMADEETVIDLEDFGNKARNLQSGPRPIIRHYKANNEGIGNSDPQHIDNSSKDESLSLIQQKEISSVNVDRNDDYQGWLQIKKRKWKSILEKRKKRRLENSKKSDGGNGVLEQMNGTTGRTNISSYFRTNEVALKRSHWQIIQLLQSSHIGQFFAWVVVDGIMLKIPVSVPRVFYLNSRSPVTEEFLGKSVKKTLPHGRQSYNLYEVSIDEVQFREASKKLAALLADPDVEVNILRNI 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120840g00032 403 MobiDBLite consensus disorder prediction 203 220 - -
Stsc120840g00032 403 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 1 396 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Stsc120840g00032 403 SUPERFAMILY DNA/RNA polymerases 1 129 IPR043502 -
Stsc120840g00032 403 MobiDBLite consensus disorder prediction 199 220 - -
Stsc120840g00032 403 MobiDBLite consensus disorder prediction 261 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120840g00032 Stsc-Chr120840 172383 225149 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120840g00032 1 396 Core DNA Replication Machinery Family AT1G08260 60.957 6.05e-151 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120840g00032 K02324 - gmx:100778115 572.778