Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120840g00030 ATGAACGGCGACGGCCGGAGACGCGACTGGAGGGACAACCCCAGGAGATCGAAGAAGCAGAAGCAGATTTGCAGTGCAGAGGAACAACTTGAGGCGAAATTAGGGTTCGAAGTCTTCTCTGAGGGCGAAAAGCGTCTTGGGTGGCTGCTCAATTTCGCATCTTCTTCTTATGAGGATGAAGAGACCCGCAAAGTTTACAGTTGCGTCGATCTTTACTTTGTTACACAGGATGGATCTTCCTTCAAGGCTAAATACAGATTTCGCCCTTATTTCTATGCAGCTACAAAGAATAAAATGGAGATGGACGTTGAAGCATACCTGAGGCGCCGTTATGAAACTCAGATTGCAGACATTAAAATTGTAGAGAAGGAAGACCTGGATCTTAAAAATCATTTGTCTGGCCTAAGAAAATCTTATCTAAAGCTATCATTTGACACCGTGCAACAATTGATGACTGTAAAGAGTGACTTGATGCATGTTGTTGAAAGAAATCAGGCAAAATCTGATGCTGCAGAAGCCTATGAATTCATATTGACTGAAAGAAGAGAACAAAAACCTCAAGACTTCATAGATTGCATAACTGATCTTCGCGAATATGATGTTCCTTATCATGTTCGCTTTGCCATTGACAATGCTACTATGACACTCAGATTCACATGTGACCCAGATATACGCTCTGGCCAGTGGTATGATGTTTGCGTGTCCAGCACTGGGTGTGTTGGTGATGACATAGAGAATTTAGAGTACACTCCTAAACCAGAGTTTGAAGGCTCTTTTACGGTTAAAAATGTTCCAAATGAGTTTGAGCTTCTTAAAGAGTGGTTTGCTGACATGCAAAAGAAATTGGGGTTTCAGTGTGACAAGAATCAAGGGGAATGTCGTGCTAAATTTGCTTGTCATTTAGATTGTTTTGCTTGGGTTAAACGTGACAGTTATCTCCCTCAAGGAAGCCAAGGCCTAAAGGCTGTTACAAAAGCAAAGTTGGGTTATGATCCCATGGAGGTGAACCCTGAGGATATGGTTCGCTTTGCAAAGGAAAAGCCTCAGACAATGGCTTCCTATTCTGTTTCTGATGCGGCATACAAAGCGAATGTTATATGTCCTAACAAACACCAATCTGATCCAGAGAAGTTTTATAACAATCATCTTCTTGAGAGTGAGACATACATAGGTGGCCATGTAGAATGCCTAGAAAGTGGTGTTTTCAGATCTGATATTCCAACTAATTTTACACTGAAGTCATCTGCCTATGAGCAATTGATCAACAATCTTGATAGAGATCTAGAGTATGCTATAAGAGTAGAGGGTAAAATGGATTTGGAATCTGTCTCTAATTATGATGAAGTAAAGACTGCTATCATGGAAAAGCTTTCAAAATTACGAGATGCTCCAATACGTGAAGAATGCCCCCTCATTTATCATTTAGATGTAGCTGCTATGTATCCAAACATAATTTTGACAAACCGACTTCAGCCACCGTCAATTGTTTCAGATGAGGTTTGCACTGCATGTGATTTCAACCGTCCTGGAAAGACATGTCTACGCAAACTTGAGTGGGTTTGGCGTGGAGAAACATTCATGGCAAAGAAAAGTGACTATTATCATATAAAGAAGCAGATTGAGTCAGATTTTGTTGATGGTGCTAATGCAAGGTTATCAAAGTCTTTTCTTGACCTGCCCAAGGCATACAAGCGTGTTCTTGACAAACCAGTTACAGAACTACGTAAAGCAGGAATCTGCATGCGTGAAAATCCATTTTATGTTGACACTGTTCGCAGTTTCCGAGACAGAAGATATGAATATAAAGGCCTTAATAAGGTTTGGAAGGGAAAACTGTCTGAAGCCAAGGCCAGTGGAAATCCTATGAAGATCCAGGAAGCACAAGTATGA 1890 0.4095 MNGDGRRRDWRDNPRRSKKQKQICSAEEQLEAKLGFEVFSEGEKRLGWLLNFASSSYEDEETRKVYSCVDLYFVTQDGSSFKAKYRFRPYFYAATKNKMEMDVEAYLRRRYETQIADIKIVEKEDLDLKNHLSGLRKSYLKLSFDTVQQLMTVKSDLMHVVERNQAKSDAAEAYEFILTERREQKPQDFIDCITDLREYDVPYHVRFAIDNATMTLRFTCDPDIRSGQWYDVCVSSTGCVGDDIENLEYTPKPEFEGSFTVKNVPNEFELLKEWFADMQKKLGFQCDKNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPMEVNPEDMVRFAKEKPQTMASYSVSDAAYKANVICPNKHQSDPEKFYNNHLLESETYIGGHVECLESGVFRSDIPTNFTLKSSAYEQLINNLDRDLEYAIRVEGKMDLESVSNYDEVKTAIMEKLSKLRDAPIREECPLIYHLDVAAMYPNIILTNRLQPPSIVSDEVCTACDFNRPGKTCLRKLEWVWRGETFMAKKSDYYHIKKQIESDFVDGANARLSKSFLDLPKAYKRVLDKPVTELRKAGICMRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNPMKIQEAQV 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120840g00030 629 FunFam DNA polymerase epsilon catalytic subunit 57 239 - -
Stsc120840g00030 629 Pfam DNA polymerase family B, exonuclease domain 75 216 IPR006133 -
Stsc120840g00030 629 SUPERFAMILY Ribonuclease H-like 61 361 IPR012337 -
Stsc120840g00030 629 MobiDBLite consensus disorder prediction 1 22 - -
Stsc120840g00030 629 Gene3D - 277 363 IPR036397 GO:0003676
Stsc120840g00030 629 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 238 280 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Stsc120840g00030 629 SUPERFAMILY DNA/RNA polymerases 364 623 IPR043502 -
Stsc120840g00030 629 Gene3D DNA Polymerase, chain B, domain 1 53 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120840g00030 Stsc-Chr120840 162458 170711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120840g00030 1 628 Core DNA Replication Machinery Family AT1G08260 64.759 0.0 959
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120840g00030 K02324 - cave:132163250 996.882