Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120840g00029 ATGAGGACAGTGTACAGCAAGGATGGGAACCTTACAAAATTACGGTTTTGCCACTGTTCCCGAGTTGTCACCCGAAACTCCCCATTTATCGTTTCTCTCATTCAAGTTCCAAACTTTACCCTCTCAATCACAACAAAAACCTTTCCCTTTCGCTCTTCCTCCATTCCCTCCTCCCAAAACAAACCTCCATGTCATAACTATCGTCATTGGCTGATTCGAGCATCAATGGCATCCTCCACATCATCCTCCACAGAGAAAGAGCGATTATCTGTGCTCTTTGTGTGCCTCGGCAACATATGCAGAAGCCCAGCTGCGGAAGGAGTATTCCAGGACTTGGTTAAGAAAAGGGGTCTCGATTCAAAGTTCAAAATCGATTCTTGTGGCACCATCGATTATCACGAGATAACTTCAATTTCAAGGCCCATCAAGCCTTCTGATTTTGTTGATTTTGATCTTATTCTAGCTATGGACATGCAAAACAGAGAGGACATATTGGAGTCTTTCAATAGTTGGCGAGTCAGATATGAGTTACCAGATGATGCGCATAAAAAGGTTAAGTTGATGTGCTCCTATTGTAAGAAGCATGATGAGAGTGAAGTCCCTGATCCTTATTATGGTGGACCGCAGGGGTTTGAGAAGGTACTAGATTTGCTTGAAGATGCTTGCGGCTCATTGCTGGAAAATATTTTGGCTGAAAAATCCTAA 705 0.4312 MRTVYSKDGNLTKLRFCHCSRVVTRNSPFIVSLIQVPNFTLSITTKTFPFRSSSIPSSQNKPPCHNYRHWLIRASMASSTSSSTEKERLSVLFVCLGNICRSPAAEGVFQDLVKKRGLDSKFKIDSCGTIDYHEITSISRPIKPSDFVDFDLILAMDMQNREDILESFNSWRVRYELPDDAHKKVKLMCSYCKKHDESEVPDPYYGGPQGFEKVLDLLEDACGSLLENILAEKS 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120840g00029 234 CDD LMWPTP 90 227 - -
Stsc120840g00029 234 Gene3D - 72 233 - -
Stsc120840g00029 234 SUPERFAMILY Phosphotyrosine protein phosphatases I 88 229 IPR036196 -
Stsc120840g00029 234 PRINTS LMW phosphotyrosine protein phosphatase signature 91 108 IPR017867 GO:0004725|GO:0006470
Stsc120840g00029 234 PRINTS LMW phosphotyrosine protein phosphatase signature 200 215 IPR017867 GO:0004725|GO:0006470
Stsc120840g00029 234 PRINTS LMW phosphotyrosine protein phosphatase signature 181 194 IPR017867 GO:0004725|GO:0006470
Stsc120840g00029 234 PANTHER LOW MOLECULAR WEIGHT PHOSPHOTYROSINE PROTEIN PHOSPHATASE-RELATED 134 233 - -
Stsc120840g00029 234 Pfam Low molecular weight phosphotyrosine protein phosphatase 91 226 IPR023485 -
Stsc120840g00029 234 SMART LMWPc_2 89 228 IPR023485 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120840g00029 Stsc-Chr120840 159566 161863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120840g00029 33 232 Protein tyrosine phosphatase (PTP) family AT3G44620 48.846 8.49e-73 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120840g00029 K25307 - gmx:100797254 271.552