Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120840g00025 ATGAAGTTTGAAGGGCGAGAGCGAGAGTGGAGAGGGTTAGGTTACGAGTTACTACGATCGATGAATAAGAGTGACAACGTAACTTCAAACCCTATCGATGGCCGAACAATGAAGCCCAAAGTCGTCGTCATTACGGGCCCCACCGCCTCCGGCAAGTCCAAGCTCGCCGTCGATCTCGCCTCACACTTTCCCGTCGAAGTCATCAACGCCGACTCCATGCAAGTCTACCGTGGTCTCGACGTCCTCACCAACAAGCTCCCTCTCTCCCAACACCAAGGAGTGCCGCACCATCTCCTAGGTACCGTAAACCCGAACGTTGAATTTACAGCTAAAGTGTTTAGGGATTCTGCTATTCCGATCATAGATGAAATAGTAGCTCGCAATCACTTGCCCGTTATAGTTGGGGGTACAAATTACTATATTCAGGCTCTTGTGAGTCCGTTTCTCCTAGACGATTCGGCAGAGGATATGAACGAAGGCTGTTCTGATGATCCATCTGGTACCACATGGTCTCCTATAAGCTTCCCCGCTGATAATGACAGTTCAAGTAATGATTATGACCGGCTTAAAGAGATCGATCCAGTTGCAGCAAATAGAATCCATCCAAATAACCATAGAAAGATCAATCAATATATTAATTTGTATTCACGCACTGGTGTTGTTCCTAGCAAAGTATTCCAAGGAAAAGCAGCAGAGAAGTGGGGTCAAGTTGATAAGTTGAGATATGATTGTTGTTTTATATGTGTGGATGCATCCCTCCCTGTGCTGGACAAATATGTTGAGGAGAGGGTAGACCACATGATGGATGCTGGATTACTCAATGAAGTCTATGATATTTACAACGTGAATGCAGATTATACTAGAGGTTTGCGGCAGGCTATTGGTGTCCGAGAATTTGAGACTCTTCTTGGAAGTTGTTTTGTTGAGGACATCTATAAAAGAGAGAAGGAACTGTCAAACGGATCCAGAATGGAAAAGGGTTTGAGATTGTTTGATGGTAATCTGATGGAGTGCTTGAAATCTTCCTCTGATACTAATACTATAAATCTTTTAGAAGAAGCAATTGAAAAAGTGAAAGTTAATACACGGAGACTTGTTCGACGGCAGAAGAGGATGCTCAGTAGACTGCAAACTCTATTCGGTTGGAACATACATTTTGTTGATTCCACTGAGTCAATATCAAGCAAATCAGAGGATGTATGGACTGACCAAGTGGTTGAGTCAGCTAAAAAGATAGTTAGCTCCTTCTTGTGTGAGAATGGAAGCTTGTCATCCACTTGTGGCATGTCAAATGACACCAACTTGAAAATTAATCAAAGGGACCTCTGGACTCAATACATATGCAAGGCCTGTGGAGACAGGGTCCTAAGAGGATTACATGAATGGGAACAACACAAAAAGGGTCGTGGCCACAGGAAACGTATTTCTAGTCTCAAGAGCAAGGCACAAAGTGTTGGTTACCTTGGAGAAAATGTTTGA 1479 0.4361 MKFEGREREWRGLGYELLRSMNKSDNVTSNPIDGRTMKPKVVVITGPTASGKSKLAVDLASHFPVEVINADSMQVYRGLDVLTNKLPLSQHQGVPHHLLGTVNPNVEFTAKVFRDSAIPIIDEIVARNHLPVIVGGTNYYIQALVSPFLLDDSAEDMNEGCSDDPSGTTWSPISFPADNDSSSNDYDRLKEIDPVAANRIHPNNHRKINQYINLYSRTGVVPSKVFQGKAAEKWGQVDKLRYDCCFICVDASLPVLDKYVEERVDHMMDAGLLNEVYDIYNVNADYTRGLRQAIGVREFETLLGSCFVEDIYKREKELSNGSRMEKGLRLFDGNLMECLKSSSDTNTINLLEEAIEKVKVNTRRLVRRQKRMLSRLQTLFGWNIHFVDSTESISSKSEDVWTDQVVESAKKIVSSFLCENGSLSSTCGMSNDTNLKINQRDLWTQYICKACGDRVLRGLHEWEQHKKGRGHRKRISSLKSKAQSVGYLGENV 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120840g00025 492 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 41 304 IPR018022 GO:0008033
Stsc120840g00025 492 Hamap tRNA dimethylallyltransferase [miaA]. 41 414 IPR018022 GO:0008033
Stsc120840g00025 492 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 284 IPR027417 -
Stsc120840g00025 492 Gene3D - 176 229 - -
Stsc120840g00025 492 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 38 417 IPR039657 -
Stsc120840g00025 492 MobiDBLite consensus disorder prediction 162 182 - -
Stsc120840g00025 492 MobiDBLite consensus disorder prediction 157 184 - -
Stsc120840g00025 492 FunFam tRNA dimethylallyltransferase 441 484 - -
Stsc120840g00025 492 Gene3D - 39 442 IPR027417 -
Stsc120840g00025 492 Coils Coil 348 368 - -
Stsc120840g00025 492 Gene3D Classic Zinc Finger 443 487 - -
Stsc120840g00025 492 FunFam LD10347p 174 230 - -
Stsc120840g00025 492 Pfam IPP transferase 74 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120840g00025 Stsc-Chr120840 145398 148984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120840g00025 44 480 C2H2 Transcription Factor Family AT2G27760 57.306 2.36e-171 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120840g00025 K00791 - gmx:100792690 724.931