Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120840g00024 ATGGACATGATGATGAAGAGGAAATCAGGGAGGAAGAAATTCAAGGAGACACGTCACCCTATCTATAGGGGTGTCCGAAGAAGGAACGGCAACAAATGGGTTTGTGAAGTTAGGGAACCCAATAGCAAGAACAATGCAAGGATTTGGTTAGGGACATACCCTACACCTGAATTGGCTGCTAGGGCACATGATGTTGCTGCCCTTGCACTTAAGGGCACCTCAGCCTCCTTCAATTTCCCTGACTCACCCTTTCTTCTTCCTCTTCCAACTTCATCTTCACCCACACATATTAGGGAGGCACTTTCAAAGGCTCTTCAACCCTTCTTCAAACCTACCACCACCACTACTAGTACTACTCTTTCTTCTTCTTCTTCGTCATCATCAATAATGTGTGGCAATGAGAATGATAATAATATGGTTGTAGAGGAAGAAGTGATGGATGCGAAGAAGGAAGAGAATAATGCGGATGAAATTGAAGATGAAGAGACAAGAAGAAGAAGAAGAATGTTCTTTGATGAGGAGGCATTGTATAATATGCCAGCATTCTTGGATAGTATGGCTGAGGCTTTGCTAATTACCCCTCCCTCTATGATTAGGGCAATGGATGATGAACATCACATTGCTTCTTCTCAAATAATAGACTTCAATAATCTCTGGACATACTAG 666 0.4249 MDMMMKRKSGRKKFKETRHPIYRGVRRRNGNKWVCEVREPNSKNNARIWLGTYPTPELAARAHDVAALALKGTSASFNFPDSPFLLPLPTSSSPTHIREALSKALQPFFKPTTTTTSTTLSSSSSSSSIMCGNENDNNMVVEEEVMDAKKEENNADEIEDEETRRRRRMFFDEEALYNMPAFLDSMAEALLITPPSMIRAMDDEHHIASSQIIDFNNLWTY 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120840g00024 221 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Stsc120840g00024 221 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Stsc120840g00024 221 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 6 220 IPR045277 GO:0003700
Stsc120840g00024 221 Pfam AP2 domain 20 72 IPR001471 GO:0003700|GO:0006355
Stsc120840g00024 221 SMART rav1_2 21 86 IPR001471 GO:0003700|GO:0006355
Stsc120840g00024 221 MobiDBLite consensus disorder prediction 112 134 - -
Stsc120840g00024 221 ProSiteProfiles AP2/ERF domain profile. 21 80 IPR001471 GO:0003700|GO:0006355
Stsc120840g00024 221 SUPERFAMILY DNA-binding domain 21 82 IPR016177 GO:0003677
Stsc120840g00024 221 CDD AP2 20 82 IPR001471 GO:0003700|GO:0006355
Stsc120840g00024 221 Coils Coil 141 168 - -
Stsc120840g00024 221 Gene3D AP2/ERF domain 21 81 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120840g00024 Stsc-Chr120840 143373 144038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120840g00024 6 216 AP2-EREBP Transcription Factor Family AT5G51990 43.602 4.97e-51 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc120840g00024 AP2 4.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120840g00024 - - gmx:100803317 176.792