Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120840g00010 ATGGAAGAGCACAACCCTCAACAACCCTCTGACTCCATTTTGGAGCACACAAGCTCTCACGAAAACAACATCATCGTTCCGAACGAAGCAAAGGTGGCGGTGGTGCCTGATTCTGGAGGCTCGGACTCCATGGCAAGACCCGAAGCTGGAGGTTCGGAGCATCATAATCATGGAGTGGTGGTGATGAAGAGGGGGAGAGGGAGACCACGAAAGTACGTCGATGCGAACGGCCACGGCGGCAGTGGGGGCAGGATACTGTCTCCGGCGTCAGCACCGCCGCCGCCTCCGGGATTCTCGGTGGCGTTGGCGTCTCCTCTTGAGAGCCCGACGTTGAAGAGGGGAAGAGGAAGGCCACGTGGTTCTGGAAAACTGCAGATTCTAGCCTCCATTGGTGGATTTGTTGCAGAAACAGCAGGTGGAAGCTTCACACCTCATGTCATGATTGTTGGTACTGGAGAGGATGTGGTGAGTAGGATATTGTCATTTTTCCAAAATGGGCCTCGTTCTGTTTGCATACTTTCAGCTACTGGTTCTGTCTCCAGTGTTGTAATTCGCCAATCTGGTGTTTCTGGTGGTCTCTTGAGATATGAGGGAAGGTTTGAGATTTTATCTTTATCTGGATCATGCACCTATACTAATGGCACTTCTAACGGATATCGCAAAGATGGCATGTTGAGTGTTTCTCTGGCTAAACCTGATGGCAGGGTTTTTGGTGGTGGCATTGAGAGTTCTTTGATTGCTGCTGGCCCTATTCAAATTGTATTGGCCACTTTCAAGCAAAACATAAGCAACCGAATCAAGAGGAGGTACTCATCTGAGCCTTCTTCTGATCGTGTCCCCTACGCCTCTGCCACTGCCGTCGCCGAGCCGGATATTCCGGATTCCTCAAGGGGTAGCCACAAAGTTCCTAAGTTGTCATTGCAAGAACAGAGTTTCCCTTCACCACCAATAACTACAAATGGAGTTCAAGATGGAGTCACTAGTGTAACAACAACAACGATAACTAATGGCATAGCAGCAGAAAATGTGATTCCTATAACAACAAATGGGGTGTCACATAATGTGATTGCTGAAGATCTCAACATGCATTCTGGTTCAGTTGATGATGTTATTGACCTTGACCAAACAGCCTCACCAGAAGAAGATGTGGATACTAGTTAA 1161 0.4849 MEEHNPQQPSDSILEHTSSHENNIIVPNEAKVAVVPDSGGSDSMARPEAGGSEHHNHGVVVMKRGRGRPRKYVDANGHGGSGGRILSPASAPPPPPGFSVALASPLESPTLKRGRGRPRGSGKLQILASIGGFVAETAGGSFTPHVMIVGTGEDVVSRILSFFQNGPRSVCILSATGSVSSVVIRQSGVSGGLLRYEGRFEILSLSGSCTYTNGTSNGYRKDGMLSVSLAKPDGRVFGGGIESSLIAAGPIQIVLATFKQNISNRIKRRYSSEPSSDRVPYASATAVAEPDIPDSSRGSHKVPKLSLQEQSFPSPPITTNGVQDGVTSVTTTTITNGIAAENVIPITTNGVSHNVIAEDLNMHSGSVDDVIDLDQTASPEEDVDTS 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120840g00010 386 CDD DUF296 143 258 IPR005175 -
Stsc120840g00010 386 Pfam AT hook motif 112 122 IPR017956 GO:0003677
Stsc120840g00010 386 Pfam AT hook motif 63 74 IPR017956 GO:0003677
Stsc120840g00010 386 Gene3D - 144 275 - -
Stsc120840g00010 386 ProSiteProfiles PPC domain profile profile. 139 279 IPR005175 -
Stsc120840g00010 386 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 39 299 IPR039605 GO:0003680
Stsc120840g00010 386 SMART AT_hook_2 112 124 IPR017956 GO:0003677
Stsc120840g00010 386 SMART AT_hook_2 63 75 IPR017956 GO:0003677
Stsc120840g00010 386 MobiDBLite consensus disorder prediction 34 99 - -
Stsc120840g00010 386 Pfam Plants and Prokaryotes Conserved (PCC) domain 144 259 IPR005175 -
Stsc120840g00010 386 MobiDBLite consensus disorder prediction 268 301 - -
Stsc120840g00010 386 SUPERFAMILY AF0104/ALDC/Ptd012-like 140 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120840g00010 Stsc-Chr120840 67825 70927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120840g00010 62 303 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 43.825 2.11e-45 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120840g00010 - - aip:107632385 567.385