Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120840g00009 ATGGAGCCACCGGTTGTTAGATCGAGAGGGAGGCCGCGGAAGCGTAGAAGAAAAGAGGAAGAAATGGAAGCTTTGGAAGCGAAGAGGCAAGCCTTGGCAACCAGATCGATAGCGTTGGTTGGACGATTCGTGCTGAAGGAGTTCCCGAAAATCGGTGTTTTTCTCGGTAAAGTTGTGTACTACGAGTGTGGCTTGTATAGAGTTAGTTATGAAGACGGTGATTTCGAGGATTTGGATAGTGGTGAGGTTCGTGCTATTCTACTAAATGATAGTGATTTTGATGATGATTTGACTAAGAGGAAGGGTAAATTGGAGGAATTAGTGTTGAAGAATAATGTAAAGGTTAAAGCTAAGTCGGTGAAGGTCTCTGATGAGTTGAATAAAGATGAATCAAAGGTTGATGGACCTGATTCGGGTGAAGTAAAAGGTGAAAACGCCGAGGAACAAGCTGAAGCTGGCGACGATTTGTTGAGTGATGATTATTCAGATTCAGATGTCGAGATAATGCCTGCGCTGCCACCGCCGCCTCCGCTGTTGCAGTTGCCACCATCGTCGGGGAATATTGGTGTGCCGGAGCAGTGTGTTTCACACCTGTTTTCTGTTTACAGTTTCTTGAGATCATTCAGCATTAGGTTGTTCCTGGCACCGTTTACTTTAGATGATTTTGTTGGTTGTCTTAATTGCCGAGTTGCTAACAGCTTGATTGATTCTATTCACGTCTCGCTATTGCGGGTATTGAGGCATCATCTTGAATCCCTTTCATCTGAAGGATCAGAGCTTGCATCGAAATGCCTTAGGTGCAATGATTGGAACTTGCTTGATGCATTGACTTGGCCTGTTTTTGTGATTCAGTATTTATTAGTTAATGGACGCACAAAAGGACCTGAATGGAAAGGGTTTTATGATGAGGCTTTTGCTTGCGAGTATTATTTATTGCCTGCAAGTAGGAAGTTAATGATATTGCAAATGCTCTGCGATGATGTTTTGGACTCAGAGGAGCTAAAAGCTGAAATGAACATGCGTGTAGAGTCAGAGGTTGGGGTGGATTATGATGTAGAAGATATGATTACTGCAGAAAATGGGCCAGGAAAAGTCCTTTCAAGACATGCCAAGACTGCTTCTGAGGATAAAAGAGCCATGAAGATAGTTTCAGCATCAAATGCTGTGAACCAACCTGGTAAGCCTAATAATTCCAATTCCAGAAATGCAGAAAACATTGTTGATGGTGATGATAGAAATGGAGATGAATGTTGTCTTTGTGGTATGGATGGGACCTTACTTTGTTGTGATGGGTGCCCCTCTTCTTATCATTCGAGGTGTATTGGTGTTATGAAAATGCATGTATCATCAGAAGGGCCATGGTATTGTCCAGAATGCAAGATTAACATGATTGGGCCAACAGTTGCAAAGGGAACATCACTTAGAGGGGCTGAAATATTCGGAATGGATTTATACGGGCAGCTTTTCATGAGTACTTGCGACCACTTATTGGTGCTCAATGTCAACAATGATGAATTCTGTCTTAAATATTACAATCAGAATGACATTCCTAATGTTATCCAAGTGCTTTGTGGATCCTTGCAGCATAGACCAATATACTATGATATTTGCAAGGCAGTGATGCAATATTGGAATATTTCTGAAAGTGTCTTGCCTCCTCCTCCTCCACCTCCTTCAGGTGAAGGTGGTAATGAAGTTCATTGTGGCAATGCAGTTCCTTCGCTTGATGCCTCAACAACTAACACTGAAAGTAATGGTCCTGAAAGCAGCAGTAATGAGCTCCCTACCACAAATATGAAGCTTCCGGAGGAAAGTAGGATGTTTTCAGTCACGTCTGTTGATTCTGGGTCTGTTTCTGTTAATAATCAGTCTGAGTTGAACTGCCAAAATTCTGTCAATGGGTTAACTGTGGTGCTTAATAAACATAGTAATTATGGCCATTCAAATAATATTGTACTCCCAATGAACTTTTCTCTGGAAACCAAAGAAAGCACCCGAGTTGGTTTTGGAAAGGTTGAACATAAAACAGCTAACAATTTTGGGTACATGAGTTTCTCCTATAAACCTCTGTCATACATTAATTACTATATGCATGGTGATTTTGCTGCATCAGCAGCTGCCAAATTGGCCATTCTATCTTCAGAGGAATCTAGGACAGAGGGTCATGTTTCCGACAGTCAGAAGAAAGCAATAGCTCAGGGGATCACTTATTTGCAAGCCACAACATTTAGCTCTATCAAACCACTCTTGCTTGAACTTGAGGAAAATATTCGCATGATTGCTTTCTGCGGGGATTGGTGTAAGTTGATGGATGATTGCTTGGTTGAATTTTCCATGATACAAAGGTCTGCATCTGCTCCTGGAACAACACAGAAACGGGCACCAAGTGGGAGGCGTTTCAAGAAACGGTCAGCTACTGAAGAAGCTACAGCTGATGCTTGCCATGAAAGCTTTGAGTGGTGGCGAGGTGGGAAATTCACCAAATTTATATTCCAAAATGCTGTTTTGCCAAGATCCCTGGTCAGGAAAGCTGCACGCCAAGGTGGTTCGAGGAAAATCTCTGGCATTTTCTATGCTGATGGATCTGAAATCCCTAAAAGGACCAGACAGTTTGTGTGGAGAGTAGCAGTACAGATGTGTAAGACTGCATCGCAGCTGGCACTTCAGGTCAGATATCTAGATTTTTATATAAGATGGAGTGATCTAATTCGTCCAGAGCAGAATGTTCAGGATGGTAAAGGTCAAGAAACTGAAGCTTCTGCTTTCAGAAATGCAAATATTTGTGATAAAAAGCTTGTAGAGGGGAAAAATTGTTATGGAGTAGCATTTGGGAGCCAAAAGCATCTCTCTACTCGTGTAATGAAAAATGTTATTGAAATTGAGCAATGTACGGAAGGAAAAGAGAAGTATTGGTTTTCCGAAACACGCATTCCTTTATATTTGGTAAAAGAGTATGAAGAAAGTAATGGAAAAGGACCATCTGATGGTGAGCACTTGAATACCGCATCACAACAGTTGCTCAGTCGGTGGTTGAAAGCATCTCGCAAAGACATTTTTTTCTACCTTACCTGCAAGAGAGACAATTTGGACATGTTCTTGTGTTCTGTATGTCATACAGGTGTTCCATTAAGGAATGCGCTCAAGTGCAATACTTGTCAAGGGTTTTGTCACGAAGGCTGTTCCTTAAGGTCAACAACAATCTTGTCAAACAAGAAAGTTGAGTATTTGACCACATGCAACCAATGTTACCATGCCAAGTTGCTTGCTAAAAAAGAGACCAGTAATGAATCTCCAACCAGCCCGTTACTCTTACAAGGACGTGAAAATAACACACTTACTATCCTAAAGGGACCAAAGCCTAAATATTCTGATCTAGCACAGAAGTCTGCCAAGGCAAAGGATAGCCGTCCAGATGCAAAACAAGTTGCTTCCATGACAGTTTTGAAGGAAGCAAAGTCTTCCACCAGATCAAAGGATAGTCATCCTGACAGTAAACAGCCTGCTTCTGGTTCCAGCTCGGCAACTACAACCCGTAAAAGAAATTGTTCTTGGGGTGTGATATGGAAGAAGAAAAATATTGACGATACAGGTGAGGAGTTTAGGCTCAAAAACATACTTTTAAAGGGAGGTTCAGGCACTCCTCATTTGCAACCAACTTGTCACTTGTGCCGTAAGGCATACAGGTCTGATCTGATGTACATTCACTGTGAGTCATGCTCAAATTGGTATCATGCTGAAGCTGTTGAACTCGAAGAGTCCAAAATTTTTGATGTACTGGGATTCAAATGTTGCAAGTGTCGCAGAATAAAATCACCTGATTGTCCTTACGCTGATCCTAAGAAAAAGGCACAAGAGTCCAAGAGGACAAGGACCTCAAAGAAAGAGTATTCTGTTCCAGATTCTGACTCCGGAACGTTTTCTGATATGAAAGAGTGTGAGGCTGCTACTCCCGTCTTCCCAGTAGAGGATGATCCTCTTCTCTTCTCTCTTTCAAGTGTGGAGCTGGTTACAGAACCTAAGTTAGAGGATGCTGAGTGGAGTACTCTCTCTGGCCCTGGACCTCGGAAACTACCAGTGAGACGGCATGTTAAACGTGAGGGGGACTGTGATGGATTTTACGGAGACAAACCATTGTATGATGAATTTTCGGCACTTAATGAAGCAGGTGATACGTACAAACCCGAGCCTTTAGATTACGGCTCTGTTGTGCCGAATGATAGCAATCTGCTTAATGAAACGGAAGGTGCACAGTATGAATTTGCGGACTTTGAACCTCATACCTACTTCTCTGTAACGGAACTGCTGCTCCCAGATGATAGTAGCCAACCTGAGGGAGCTGATGCATCTGGTGAATTGTCAGGATATTTCGGGAATTCTTGTACACAAGTTCCTGAAGAATGTGGTCTAAGTTTAGAGGACAAATCAGAACCTGCCTTATCCTTTGAAGATGTTTATAGTTGCAGGCAGTGCGGGCAAATGGAACCATCCCCTGATCTCTGTTGTGAGATTTGTGGGATTTTCATTCACAGCCAATGCTCCCCATGGGTTGAATCACCAACAAGGCTTGGAAGTTGGAGGTGTGGCAATTGCCGGGAATGGCAATAG 4605 0.425 MEPPVVRSRGRPRKRRRKEEEMEALEAKRQALATRSIALVGRFVLKEFPKIGVFLGKVVYYECGLYRVSYEDGDFEDLDSGEVRAILLNDSDFDDDLTKRKGKLEELVLKNNVKVKAKSVKVSDELNKDESKVDGPDSGEVKGENAEEQAEAGDDLLSDDYSDSDVEIMPALPPPPPLLQLPPSSGNIGVPEQCVSHLFSVYSFLRSFSIRLFLAPFTLDDFVGCLNCRVANSLIDSIHVSLLRVLRHHLESLSSEGSELASKCLRCNDWNLLDALTWPVFVIQYLLVNGRTKGPEWKGFYDEAFACEYYLLPASRKLMILQMLCDDVLDSEELKAEMNMRVESEVGVDYDVEDMITAENGPGKVLSRHAKTASEDKRAMKIVSASNAVNQPGKPNNSNSRNAENIVDGDDRNGDECCLCGMDGTLLCCDGCPSSYHSRCIGVMKMHVSSEGPWYCPECKINMIGPTVAKGTSLRGAEIFGMDLYGQLFMSTCDHLLVLNVNNDEFCLKYYNQNDIPNVIQVLCGSLQHRPIYYDICKAVMQYWNISESVLPPPPPPPSGEGGNEVHCGNAVPSLDASTTNTESNGPESSSNELPTTNMKLPEESRMFSVTSVDSGSVSVNNQSELNCQNSVNGLTVVLNKHSNYGHSNNIVLPMNFSLETKESTRVGFGKVEHKTANNFGYMSFSYKPLSYINYYMHGDFAASAAAKLAILSSEESRTEGHVSDSQKKAIAQGITYLQATTFSSIKPLLLELEENIRMIAFCGDWCKLMDDCLVEFSMIQRSASAPGTTQKRAPSGRRFKKRSATEEATADACHESFEWWRGGKFTKFIFQNAVLPRSLVRKAARQGGSRKISGIFYADGSEIPKRTRQFVWRVAVQMCKTASQLALQVRYLDFYIRWSDLIRPEQNVQDGKGQETEASAFRNANICDKKLVEGKNCYGVAFGSQKHLSTRVMKNVIEIEQCTEGKEKYWFSETRIPLYLVKEYEESNGKGPSDGEHLNTASQQLLSRWLKASRKDIFFYLTCKRDNLDMFLCSVCHTGVPLRNALKCNTCQGFCHEGCSLRSTTILSNKKVEYLTTCNQCYHAKLLAKKETSNESPTSPLLLQGRENNTLTILKGPKPKYSDLAQKSAKAKDSRPDAKQVASMTVLKEAKSSTRSKDSHPDSKQPASGSSSATTTRKRNCSWGVIWKKKNIDDTGEEFRLKNILLKGGSGTPHLQPTCHLCRKAYRSDLMYIHCESCSNWYHAEAVELEESKIFDVLGFKCCKCRRIKSPDCPYADPKKKAQESKRTRTSKKEYSVPDSDSGTFSDMKECEAATPVFPVEDDPLLFSLSSVELVTEPKLEDAEWSTLSGPGPRKLPVRRHVKREGDCDGFYGDKPLYDEFSALNEAGDTYKPEPLDYGSVVPNDSNLLNETEGAQYEFADFEPHTYFSVTELLLPDDSSQPEGADASGELSGYFGNSCTQVPEECGLSLEDKSEPALSFEDVYSCRQCGQMEPSPDLCCEICGIFIHSQCSPWVESPTRLGSWRCGNCREWQ 1534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120840g00009 1534 CDD PHD_SF 1219 1266 - -
Stsc120840g00009 1534 ProSiteProfiles DDT domain profile. 192 252 IPR018501 -
Stsc120840g00009 1534 PANTHER PHD FINGER FAMILY PROTEIN 35 1408 - -
Stsc120840g00009 1534 ProSiteProfiles Zinc finger PHD-type profile. 414 462 IPR019787 -
Stsc120840g00009 1534 SMART testlast3 192 252 IPR018501 -
Stsc120840g00009 1534 MobiDBLite consensus disorder prediction 786 805 - -
Stsc120840g00009 1534 MobiDBLite consensus disorder prediction 1277 1305 - -
Stsc120840g00009 1534 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 307 339 IPR028942 -
Stsc120840g00009 1534 MobiDBLite consensus disorder prediction 385 404 - -
Stsc120840g00009 1534 SUPERFAMILY FYVE/PHD zinc finger 1475 1532 IPR011011 -
Stsc120840g00009 1534 Coils Coil 15 35 - -
Stsc120840g00009 1534 CDD PHD_SF 1486 1530 - -
Stsc120840g00009 1534 MobiDBLite consensus disorder prediction 573 599 - -
Stsc120840g00009 1534 MobiDBLite consensus disorder prediction 126 149 - -
Stsc120840g00009 1534 MobiDBLite consensus disorder prediction 1094 1112 - -
Stsc120840g00009 1534 MobiDBLite consensus disorder prediction 126 153 - -
Stsc120840g00009 1534 MobiDBLite consensus disorder prediction 1277 1297 - -
Stsc120840g00009 1534 ProSitePatterns Zinc finger PHD-type signature. 417 459 IPR019786 -
Stsc120840g00009 1534 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1209 1286 IPR013083 -
Stsc120840g00009 1534 Pfam DDT domain 193 248 IPR018501 -
Stsc120840g00009 1534 MobiDBLite consensus disorder prediction 1 21 - -
Stsc120840g00009 1534 MobiDBLite consensus disorder prediction 385 406 - -
Stsc120840g00009 1534 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 403 495 IPR013083 -
Stsc120840g00009 1534 MobiDBLite consensus disorder prediction 552 599 - -
Stsc120840g00009 1534 SUPERFAMILY FYVE/PHD zinc finger 403 461 IPR011011 -
Stsc120840g00009 1534 MobiDBLite consensus disorder prediction 1094 1177 - -
Stsc120840g00009 1534 SUPERFAMILY FYVE/PHD zinc finger 1213 1272 IPR011011 -
Stsc120840g00009 1534 SMART PHD_3 1033 1083 IPR001965 -
Stsc120840g00009 1534 SMART PHD_3 416 460 IPR001965 -
Stsc120840g00009 1534 SMART PHD_3 1486 1531 IPR001965 -
Stsc120840g00009 1534 SMART PHD_3 1219 1267 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120840g00009 Stsc-Chr120840 53948 61589 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120840g00009 282 746 EF-hand Containing Proteins AT5G22760 37.815 5.00e-70 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Stsc120840g00009 DDT 1.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120840g00009 - - gmx:100808261 1075.08