Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120840g00002 ATGTCACGTCGTAACCAACCTTCTCATTCTGAGTCCTCCGCTGGAAGAGGCCGCGGCCGTGGTCGTGGAGGCGGACCGGCGCCATCTGTTCCTGGCGTTCGTCCGTCTGCTCCGTCCGGTGGACCGTCCATGCCATCTGCTACTCCTACTGTTCTGCCGGCAACGATCGGTTCTTCGACCACGGTTTCTCCTCCCGCTGCTGTTACTTCAACTTCAGCGTCGAGTTCGTCGACGCCAGAGGCCGTTACTTTGGAAGTTGAGAAACTCGCATTGCAGCCAGTGGCGCCGTCGTCGTCGAAGGCGTTGCGGCCTCCAGCAAGACCAGGTTTCGGAAGGATGGGAGTGAAGATCAAGATCCGCGCGAACCACTTCCTGGTTGAAATTGCTGATCGAAATCTTCACCACTACGATGTGGCCATAACTCCTGAGGTTACTTCGAAGAGCATCAAAAGAATACTGGTTAACCTGTTGGTTACCAAGTATCTGAAAACAAACCTCGGGAATCGCATTCCTGCTTTTGACGGCAATAAGAACCTCTACACGGCTGGAGCGTTACCGTTTGAGTCTCAGGATTTCATCGTCAAGCTTTCTGATGATGATCGCAAAGGCTCTTCAGCTGCTGCTTCTGGTTCAGCCAGAAAACGCGAACGTGAGTTCAAAATTACTATCAGATTTGCTGCCAAGGTTGAACTTGGGAATCTTAACCAGTTCCTCAAGGGCCAGCAGCTTGAATCTCCACAGGATACCATCCAAGCTCTTGATGTCGCCTTACGAGCATTGCCATCTGAAAAGTACAATGTTTCGGGGAGGTCATTCTTTTCACCAGTGCTGGGTCCGAAGGGGTCGCTTGGTGGTGGTGTAGAATACTGGAGGGGTTATTATCAAAGCCTTCGTCCCACTCAGATGGGACTTTCGCTTAATATTGATGTGTCAGCAAGGTCCTACTATGAACCAATTCTTGTTACTGATTTCATTGAGAAACACTTCAATCTTGATTTGTCTAGGCGTCTGTCTGACCAAGATCGTGTTAAGATTAAGAGAGCTTTAAGGGGAATCAAGGTAGAGGTTCGCAACAATGAGTTCATTAGAGGTTACAAAGTCACTGGAGTTTCAACGGAGCCATTACATGCGTTAACGTTTAATGTTGATGACAATGCAACAAAAAAAACAGTTGTGCAATATTTCCACGAGAAGTATGGTATCCAATTGAGGTATTTGAACCTTCCTGCTATACAAGCTGGAAGTGACGTGAAACCTGCATATTTGCCTATGGAGGTTTGTTGGATTGCTGCTGGACAGAGGTACACCAAGAGATTAACTGAGGCCCAAGTAACTTCACTTCTGAAGGCAAATTGTCAGCGTCCTCAAGACAGGGAAAACTATATCAGACAGATTGCCAGGCAGAACAACTTCGACAATGACAAACATGCTCGGGAATTTGGAATCCGTGTAAAAGAGGAACTATCATTGATTGATGCTCGAGTCTTGCATCCTCCAATGCTTAAATACCATGAAAGTGGAAAAGAAAAAATGGTTAATCCACAGATGGGTGCTTGGAATATGATAAATAAGAAAATGTATTATGGTGGGACAGTCCAGAATTGGACTTGTATTAATTTTTCTAGAAGAATGAACAGAGATATGCCATCTCAGTTTTGTGCTGAATTGATTGCTATGTGTAGTAGCAAGGGGATGAATTTCAACCCAGAGCCTCTAATCCCTATAACTACATCTCAACCTAATGCAATAGAGAGAGCTCTTGTTGAGCTTCATAATAAGTGTGCACAGAAACGGCAGCAGCTTCAGCTATTGATAGTAATTTTGCCTGACACAAAGGGGTCCTATGGAACAATAAAGCGGAAATGTGAAACTGAACTAGGAATTGTGTCTCAATGCTGTTTGCCGAATAATGCTTATCAGATGAAGAAGCAGTATCTTGAAAATGTTTCTCTCAAAATAAATGTGAAGGTTGGTGGTCAAAACCTGGTATTAGATGATGCAGCTCTGCGCAAAATTCCCCTTGTATCTGATAGACCAACTTTAATATTAGGAGCTGATGTAACGCATCCACAGCCCGGGGAAGACTCGGGTCCCTCTATTGCTGCAGTTGTGGGATCCATAGATTGGCCGCTTGTCACACAGTACAGAGCAATTGTTTCTGCCCAGACGCACCGTCAAGAAATAATTGAGGATCTATACAAAACTTCTGTGGATCCAAACAAGGGAATTGTGCATGGAGGAATGATCAGGGAGCTGCTCATCGCATTTTACCGCTCAACAAAACGTAAGCCTGACAGGATTATATTCTACAGAGATGGAGTCAGTGAAGGCCAGTTCAGTCAAGTTTTGCTTTATGAGATGGATGCAATAAGAAAGGCTTGTGACTCCTTGGAGAAGGATTATCAGCCCCGAGTTACATTTGTTGTCGTACAGAAAAGACATCACACTCGTTTCTTCCCTGCTGATCACAGAAGTCGTGATCAAACCGACAAAAGTGGAAACATAAAGCCAGGTACTGTTGTCGACACCAAGATCTGCCACCCTTGGGAGCATGATTTCTACCTCAACAGCCATGCTGGAATTCAAGGAACCAGTCGACCTACTCATTATCATATGCTGTATGATGATAACAACTTCACTGCTGATGGGTTCCAGACTTTGACCAATAACTTATGTTACACGTATGCTAGGTGCACTCGATCAGTATCAGTAGTTCCTCCTGCATATTATGCTCACTTAGCTGCTTTTCGAGCTCGCTACTACATTGAAGGTGAAATGTCAGAAGGGGATTCTGCAAGTCGGGGCGGTGGTGGTGGCGTCATCTTAAACTTGCCTGAAGTCAAGGACAATGTCAAGCAAGTCATGTTTTATTGCTGA 2877 0.4519 MSRRNQPSHSESSAGRGRGRGRGGGPAPSVPGVRPSAPSGGPSMPSATPTVLPATIGSSTTVSPPAAVTSTSASSSSTPEAVTLEVEKLALQPVAPSSSKALRPPARPGFGRMGVKIKIRANHFLVEIADRNLHHYDVAITPEVTSKSIKRILVNLLVTKYLKTNLGNRIPAFDGNKNLYTAGALPFESQDFIVKLSDDDRKGSSAAASGSARKREREFKITIRFAAKVELGNLNQFLKGQQLESPQDTIQALDVALRALPSEKYNVSGRSFFSPVLGPKGSLGGGVEYWRGYYQSLRPTQMGLSLNIDVSARSYYEPILVTDFIEKHFNLDLSRRLSDQDRVKIKRALRGIKVEVRNNEFIRGYKVTGVSTEPLHALTFNVDDNATKKTVVQYFHEKYGIQLRYLNLPAIQAGSDVKPAYLPMEVCWIAAGQRYTKRLTEAQVTSLLKANCQRPQDRENYIRQIARQNNFDNDKHAREFGIRVKEELSLIDARVLHPPMLKYHESGKEKMVNPQMGAWNMINKKMYYGGTVQNWTCINFSRRMNRDMPSQFCAELIAMCSSKGMNFNPEPLIPITTSQPNAIERALVELHNKCAQKRQQLQLLIVILPDTKGSYGTIKRKCETELGIVSQCCLPNNAYQMKKQYLENVSLKINVKVGGQNLVLDDAALRKIPLVSDRPTLILGADVTHPQPGEDSGPSIAAVVGSIDWPLVTQYRAIVSAQTHRQEIIEDLYKTSVDPNKGIVHGGMIRELLIAFYRSTKRKPDRIIFYRDGVSEGQFSQVLLYEMDAIRKACDSLEKDYQPRVTFVVVQKRHHTRFFPADHRSRDQTDKSGNIKPGTVVDTKICHPWEHDFYLNSHAGIQGTSRPTHYHMLYDDNNFTADGFQTLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARYYIEGEMSEGDSASRGGGGGVILNLPEVKDNVKQVMFYC 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120840g00002 958 Pfam N-terminal domain of argonaute 116 257 IPR032474 -
Stsc120840g00002 958 SUPERFAMILY PAZ domain 116 471 IPR036085 GO:0005515
Stsc120840g00002 958 Gene3D paz domain 314 435 - -
Stsc120840g00002 958 ProSiteProfiles Piwi domain profile. 603 923 IPR003165 GO:0003676
Stsc120840g00002 958 Pfam Mid domain of argonaute 513 592 IPR032473 -
Stsc120840g00002 958 CDD PAZ_argonaute_like 321 427 - -
Stsc120840g00002 958 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 100 924 - -
Stsc120840g00002 958 SUPERFAMILY Ribonuclease H-like 597 923 IPR012337 -
Stsc120840g00002 958 SMART Piwi_a_2 603 923 IPR003165 GO:0003676
Stsc120840g00002 958 Gene3D - 495 666 - -
Stsc120840g00002 958 Pfam PAZ domain 332 447 IPR003100 GO:0005515
Stsc120840g00002 958 Pfam Argonaute linker 2 domain 457 503 IPR032472 -
Stsc120840g00002 958 SMART PAZ_2_a_3 328 451 IPR003100 GO:0005515
Stsc120840g00002 958 Pfam Argonaute linker 1 domain 269 316 IPR014811 -
Stsc120840g00002 958 CDD Piwi_ago-like 475 922 IPR045246 -
Stsc120840g00002 958 FunFam Argonaute 10 495 665 - -
Stsc120840g00002 958 ProSiteProfiles PAZ domain profile. 319 431 IPR003100 GO:0005515
Stsc120840g00002 958 FunFam protein argonaute 10-like 671 958 - -
Stsc120840g00002 958 SMART DUF1785_2 266 318 IPR014811 -
Stsc120840g00002 958 MobiDBLite consensus disorder prediction 1 80 - -
Stsc120840g00002 958 MobiDBLite consensus disorder prediction 41 80 - -
Stsc120840g00002 958 Gene3D - 672 958 IPR036397 GO:0003676
Stsc120840g00002 958 Pfam Piwi domain 604 922 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120840g00002 Stsc-Chr120840 5984 11348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120840g00002 18 958 Eukaryotic Initiation Factors Gene Family AT1G48410 54.703 0.0 1063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120840g00002 K11593 - pop:7463340 1201.81