Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120839g00035 ATGGTTCAAGCACACACGCATACCGAAGATGAAGGTATCATCAGGGAGTTGATTATCGACTTCTATGAAACTTCAAAGCAAAGGAAGCCTCAGCAAATTATAGTTTTCAGGGATGGAGTGAGTGAATCACAGTTCATCAAGGTGTTGAATGAAGAAATGGTTCTAATCATAGAGGCATGCAAATATCTTGATGAGAAGTGGTGTCCCAAGTTTACTTTTATTGTTGCTCAGAAGAATCATCATACCAAGTTCTTTAAGGACAATGCCCCAGATAATGTTCCACCAGATTAG 291 0.3918 MVQAHTHTEDEGIIRELIIDFYETSKQRKPQQIIVFRDGVSESQFIKVLNEEMVLIIEACKYLDEKWCPKFTFIVAQKNHHTKFFKDNAPDNVPPD 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120839g00035 96 SUPERFAMILY Ribonuclease H-like 11 94 IPR012337 -
Stsc120839g00035 96 ProSiteProfiles Piwi domain profile. 1 96 IPR003165 GO:0003676
Stsc120839g00035 96 Gene3D - 2 96 IPR036397 GO:0003676
Stsc120839g00035 96 Pfam Piwi domain 6 94 IPR003165 GO:0003676
Stsc120839g00035 96 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 11 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120839g00035 Stsc-Chr120839 286102 286659 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120839g00035 8 91 Eukaryotic Initiation Factors Gene Family AT5G43810 47.619 5.67e-19 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120839g00035 K11593 - twl:120001680 150.214