Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120839g00032 ATGGTGGAACATAAAGCTGTCGAGGCACTTAATGGAAAGAAGTTTGATGATAAAGAGCGGTATGTGGGGAAAGCCCAGAAGAAATCTGAAAGGGAGCTTGCGCTGAAAGAGCGTTTTGAGCAAAGTATGAAGGAAGCTGCTGACAAATATCAAGGTACTAACTTGTATCTCAAAAACTTGGATGATAGCATTGATGATGTCAAGCTCCGTGAACTCTTCTCCGAGTTTGGTACAATAACTTCATGCAAGCTCGAAGTAATGAAAGGGAAATTGATTTCTGGCAAACCTCTCTATGTTGCCCTTGCACAGAGAAAGGAGTTATCTTAA 327 0.4128 MVEHKAVEALNGKKFDDKERYVGKAQKKSERELALKERFEQSMKEAADKYQGTNLYLKNLDDSIDDVKLRELFSEFGTITSCKLEVMKGKLISGKPLYVALAQRKELS 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120839g00032 108 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 55 84 IPR000504 GO:0003723
Stsc120839g00032 108 SUPERFAMILY RNA-binding domain, RBD 5 106 IPR035979 GO:0003676
Stsc120839g00032 108 Gene3D - 47 90 IPR012677 -
Stsc120839g00032 108 PANTHER RNA BINDING PROTEIN 5 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120839g00032 Stsc-Chr120839 260572 261151 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120839g00032 5 106 Eukaryotic Initiation Factors Gene Family AT2G23350 57.812 4.73e-41 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120839g00032 K13126 - ncol:116250153 153.68