Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120839g00031 ATGGCAGTGGATCTGGTAGGGGTTCCGCGGGTGAGGATGGAACAACAAGAACAAGTTGCAATTCAAGAAGCTGCTTCCGCTGGTTTGAAGAGCATGGAGCATCTCATACGCCTCCTCTCTTCCCAATCTCATTCTCCTTCTCCTTCTACTTCCTCTTCATCTCTCCCCAACGCGAACAATGATAACAACCTCAACTGCTCACAACTAACCGACTTTACAGTTTCCAAGTTCAAGCAAGTCATCAACCTCCTTAACCGCACCGGCCACGCCCGATTCCGCCGCGCTCCGCCACTAAACCACCCTAACCCTAACCCTCCACCTCAGCCTCAGTCCCAGCCTGGAACCAGCACCACCACCGGCTTGACGCTAGATTTCGCCAAGCCAACCATTCTGAACTCCAAGCCAGCCGTCACCAAGGATGTCGATCAAGACATGGAACTCAGTATCTCCCCTCCGGTTTCCACCACCACTTCTTCCACCTTCATGTCCTCCATCACCGGCGACGCTAGCGTCTCCGACGGCAAGATTGGCCCCTTCCTTACCCTTCCAGCTCCCGCGCCCGCTCCGGTTCCCTCCGGCAAACCTCCCCTGTCTTCTTCTCACCGAAAAAGGTGCCATGACGCAACCCTCTCCGGAAAAGCCTCCTCCTCTGCGCACTGCCATTGCTCCAAAAGAAGGAAATCACGTGTGAAACGAACGATCCGTGTGCCGGCGATAAGCTCGAAGATCGCCGATATCCCGCCTGATGAATTCTCTGGCTACTACAGGTGCAGCACCGTGAGAGGGTGTCCGGCCCGGAAGCATGTGGAGAGAGCGCAAGACGATCCGAAGATGCTAATAGTGACGTACGAAGGAGAGCACCGTCACAATCCGCAGCCACACTTGCCGGAAACTGCCGTCACTCCCGCCGTCACCTCTGCTGGTGGTTTTAGCCTCCGATCATGTTGA 948 0.557 MAVDLVGVPRVRMEQQEQVAIQEAASAGLKSMEHLIRLLSSQSHSPSPSTSSSSLPNANNDNNLNCSQLTDFTVSKFKQVINLLNRTGHARFRRAPPLNHPNPNPPPQPQSQPGTSTTTGLTLDFAKPTILNSKPAVTKDVDQDMELSISPPVSTTTSSTFMSSITGDASVSDGKIGPFLTLPAPAPAPVPSGKPPLSSSHRKRCHDATLSGKASSSAHCHCSKRRKSRVKRTIRVPAISSKIADIPPDEFSGYYRCSTVRGCPARKHVERAQDDPKMLIVTYEGEHRHNPQPHLPETAVTPAVTSAGGFSLRSC 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120839g00031 315 SMART WRKY_cls 247 291 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc120839g00031 315 Gene3D WRKY domain 211 292 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc120839g00031 315 MobiDBLite consensus disorder prediction 92 121 - -
Stsc120839g00031 315 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 253 294 IPR044810 GO:0003700
Stsc120839g00031 315 MobiDBLite consensus disorder prediction 184 203 - -
Stsc120839g00031 315 ProSiteProfiles WRKY domain profile. 253 292 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc120839g00031 315 Pfam WRKY DNA -binding domain 253 289 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc120839g00031 315 MobiDBLite consensus disorder prediction 40 62 - -
Stsc120839g00031 315 SUPERFAMILY WRKY DNA-binding domain 253 291 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc120839g00031 315 MobiDBLite consensus disorder prediction 98 112 - -
Stsc120839g00031 315 Pfam Plant zinc cluster domain 202 245 IPR018872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120839g00031 Stsc-Chr120839 254731 256181 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120839g00031 1 305 WRKY Transcription Factor Family AT2G24570 46.491 6.46e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc120839g00031 WRKY 9.2e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120839g00031 - - gmx:732587 315.079