Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120839g00007 ATGCAAGCCTTAAGGGATGAAATCACAGGGCTGAATAGTTATTTTCTCCCTTCAGAAACATACAACTATACTACTACTACTATTCCCACCATGATCCAAAATACCAACAATACCCTTACATCTTTTCAACCATACAATAACAACAGCCAATTCTACAATGGTAATTTCCTTAATCAAATGCTTCTTCTTAGCAACAATAGTCCTTCTCAATCATCATGCATCAGCAGCAGCAACAACTCAACCTCTGATGAAGCCGACGAACAACAACAACAGCAACAACAAAGCCTTATCATAAACGAGAGGAAGCACAGAAGGATGATATCGAACCGCGAATCGGCACGCCGGTCCCGGATGAGGAAGCAGAAACACCTTGATGAGCTTTGGTCACAGGTCGTTTGGCTGAGGAATGAGAATCACCAGTTATTGGACAAATTGAACAATGTTTCTGAGTCACATGACAAGATTCTTCAAGAGAATGCTCAGCTGAGAGAAGAGGCTTCAGAACTTCGCCAAATGCTTTGTGACATGCAGCTACATAGTCCAATTTGCCCTCCTCCCTTGAGTCCTTTTCATCATCATCATGATCATCAAGATCAAGAAGTTATAGAAGAAGATCTCAACAAATATGATGATTCCTCAAACCAATCCAATCAGGCTGTTGTCTGA 666 0.4129 MQALRDEITGLNSYFLPSETYNYTTTTIPTMIQNTNNTLTSFQPYNNNSQFYNGNFLNQMLLLSNNSPSQSSCISSSNNSTSDEADEQQQQQQQSLIINERKHRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLLDKLNNVSESHDKILQENAQLREEASELRQMLCDMQLHSPICPPPLSPFHHHHDHQDQEVIEEDLNKYDDSSNQSNQAVV 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120839g00007 221 CDD bZIP_plant_GBF1 102 153 IPR045314 GO:0003700|GO:0006355
Stsc120839g00007 221 MobiDBLite consensus disorder prediction 68 97 - -
Stsc120839g00007 221 Pfam bZIP transcription factor 101 159 IPR004827 GO:0003700|GO:0006355
Stsc120839g00007 221 MobiDBLite consensus disorder prediction 68 101 - -
Stsc120839g00007 221 Gene3D - 99 154 - -
Stsc120839g00007 221 PANTHER BASIC LEUCINE ZIPPER 43-RELATED 30 181 IPR044521 -
Stsc120839g00007 221 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 99 162 IPR004827 GO:0003700|GO:0006355
Stsc120839g00007 221 SUPERFAMILY Leucine zipper domain 101 150 IPR046347 GO:0003700|GO:0006355
Stsc120839g00007 221 SMART brlzneu 97 161 IPR004827 GO:0003700|GO:0006355
Stsc120839g00007 221 FunFam BZIP transcription factor 99 150 - -
Stsc120839g00007 221 Coils Coil 145 172 - -
Stsc120839g00007 221 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 104 119 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120839g00007 Stsc-Chr120839 62908 63573 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120839g00007 44 182 bZIP Transcription Factor Family AT3G30530 65.278 1.31e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc120839g00007 bZIP_1 6.9e-14 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120839g00007 - - adu:107486353 298.516