Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120838g00042 ATGGGTTATCTCTCTTGCAATGCCGACTCTGCAATCGCCACCTGTGACCCTAACTACTGGCATCTCAAGAAACCCAAAACCACCGCCAACTCTAACAACCTCCTTCAAATCCGCCACTTCCATTACTCAGACCTTGACAAAGCCACTAACAGCTTCTCCGCCGATAGCTTCCTCGGTAAAGGCAGCCACGGCAGCGTCTACAGAGCAACACTCGACGGCGGCAAACTCATCGCCGCCGTCAAGAAAACTAAGCACGCCAAACCGTCAACCCGCCGTCACCAGAGCACCGCCGCAGCATCTTGCACCGGCTGCGGCAACTGCACCAGCCCGGCGGAGAACGAGATCGAGATCCTCTCACGCGTCTACAGCCCCCGCCGCCTCGTGAACCTCATCGGATTCTGCACCGATCCGAACAACGGCGGCAAGCTCATCGTCGTGGAGTACATGCCGAACGGCTCCCTCCACGAGCTCCTCCACTCACCGGTCCGACCTCCCGGTTGGACCGCACGCGTCCGGTTCGCACTTCAAATTGCGAAAGCGGTTCACGCGCTTCACACATCAAACCCTCCTGTGATCCACAGAGACATAAAATCTTCCAACGTTCTCATCGACGGAGCGTGGAACGCGAGGCTCGGAGACTTTGGCCTTGCTCTTAGAGGACACGTGGAGGACGTGCGCGTGAAGTGCACGCCTCCAGCTGGCACGTTAGGTTACCTTGATCCTTGCTATCTTGCGCCCGAGGATCTCAGCGCCAAGAGCGACGTCTTCAGCTTCGGGATCTTGCTCTTGGAGATTCTCAGCGGCAGGAACGCCATCGACGTCAACTTCAGTCCGCCGTCTGTGGTGGACTGGGCGGTGCCGTTGATAAAGAGAGGAGAGTTCTCCGGGATTTGCGACCGGCGGATCGGAGCTCCGTCGGATAAAGAGGTGGTTCGGATGGTGGCGGTGATGGCGGCGAGGTGCGTGAGGTCCACGGCAGAGAAGAGGCCGTCAATGGAGGAGGTTGTTCAGTGCTTGAAGATCGCTAGGAAGAGGATGCGAGCGGCGCCGATTTGGAGCGGGTGTAGGTGGCGCGTGAGGCGCGTGGATAGTGAGAGACGGTTAGAGTGGGAAGCGCGTGAGTGTGATAGTTATTACGATAGGAGTTCGGAGGCGAAGGGTGGTGGAAGTAGAAGGAAGAAGAACAGGAAGGTATCGAGTGTGACGGGTGCAGAGTATTATGGTGGAGCCTCATCCAATCATGTGGGTCGGTCAAAGTCAATCGGTGCGGGTTCTCAACAAAACGGGTCGGGTTTCGTGAGGAGGAGGTCGAGGCTTCACAAGTCTAAGTCTATGGGGATGTTGCAAGGCTCTTCTCATTTTCCATCATCACATTATTATGACAATAATAATAATAATAATAAGAAGAAGAAGAAAGAGAGTGATCCAATGCATTCGTTAGAGATGGCAATGTCGTCTAAGTGGCTCATTACGGAGATGGTGGAAAAGAAATTGCTTGAGAAACCGTTAGTTAATTCTGTTGGAATTAGTTAG 1533 0.546 MGYLSCNADSAIATCDPNYWHLKKPKTTANSNNLLQIRHFHYSDLDKATNSFSADSFLGKGSHGSVYRATLDGGKLIAAVKKTKHAKPSTRRHQSTAAASCTGCGNCTSPAENEIEILSRVYSPRRLVNLIGFCTDPNNGGKLIVVEYMPNGSLHELLHSPVRPPGWTARVRFALQIAKAVHALHTSNPPVIHRDIKSSNVLIDGAWNARLGDFGLALRGHVEDVRVKCTPPAGTLGYLDPCYLAPEDLSAKSDVFSFGILLLEILSGRNAIDVNFSPPSVVDWAVPLIKRGEFSGICDRRIGAPSDKEVVRMVAVMAARCVRSTAEKRPSMEEVVQCLKIARKRMRAAPIWSGCRWRVRRVDSERRLEWEARECDSYYDRSSEAKGGGSRRKKNRKVSSVTGAEYYGGASSNHVGRSKSIGAGSQQNGSGFVRRRSRLHKSKSMGMLQGSSHFPSSHYYDNNNNNNKKKKKESDPMHSLEMAMSSKWLITEMVEKKLLEKPLVNSVGIS 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120838g00042 510 MobiDBLite consensus disorder prediction 413 433 - -
Stsc120838g00042 510 SMART serkin_6 52 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120838g00042 510 Pfam Protein kinase domain 55 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120838g00042 510 ProSitePatterns Protein kinases ATP-binding region signature. 58 82 IPR017441 GO:0005524
Stsc120838g00042 510 MobiDBLite consensus disorder prediction 409 478 - -
Stsc120838g00042 510 SUPERFAMILY Protein kinase-like (PK-like) 34 341 IPR011009 -
Stsc120838g00042 510 ProSiteProfiles Protein kinase domain profile. 52 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120838g00042 510 MobiDBLite consensus disorder prediction 380 399 - -
Stsc120838g00042 510 MobiDBLite consensus disorder prediction 444 463 - -
Stsc120838g00042 510 Gene3D Phosphorylase Kinase; domain 1 22 148 - -
Stsc120838g00042 510 PANTHER OS01G0253100 PROTEIN 32 343 - -
Stsc120838g00042 510 MobiDBLite consensus disorder prediction 464 478 - -
Stsc120838g00042 510 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Stsc120838g00042 510 Gene3D Transferase(Phosphotransferase) domain 1 149 350 - -
Stsc120838g00042 510 FunFam Serine/threonine-protein kinase-like protein 149 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120838g00042 Stsc-Chr120838 305422 306954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120838g00042 38 350 Receptor kinase-like Gene Family AT3G59420 40.252 3.29e-64 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Stsc120838g00042 Pkinase 7.6e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120838g00042 - - ahf:112706221 789.645