Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120838g00041 ATGGAATTTGACGAGCACGAAGACCAAGAGGAAGAGGAAATGGGGATCCCGGAGCCTCCGCCTCCGCCGCCGGGTTATGATTCATTCGGAAACTCCGCGGCCAAGTCCAAATCAGAAGGAGGAGGAGGAGGAGCACCCGCCGCCGTGACACCTGGTCGGAAAGGTGGAACTGCCGTCAGGTACAGAGAATGTCAGAAGAATCACGCCGTCAGCATCGGCGGCCATGCCGTCGACGGCTGCTGCGAGTTTCTAGCCGCCGGAGAGGAAGGAACACTGGAGGCTGTGATCTGCGCTGCCTGCAACTGCCACCGCAATTTCCACCGCAAAGAGATCGACGGCGAGACGAGCCCCTACCACCAGAACAATCCTCGGCCTCAGCAACCGCCGCAACCACCTCTGCACCACCACCAGTATCACCAATTCTCCCCTTACTACCACCGCGCACCGCCTCCTCCTTCCGGCGGATATCTCCATCTGTCAACTCCGCCGGTGTCTCAGCATCGGCCTTTAGCTCTTCCACCAGCTGCATCAGGCGGCGGCGGCGGTGGATTCTACAAAGAGGAAGAAGACATGTCAAACCCTAGCAGCAGCGGCGGCGGTGGCGGTAGTGGAAGCGGTTCAAAGAAGAGGTTTAGAACAAAATTCACACAGGAGCAGAAGGATAAGATGCTTGCATTTGCGGAGCAGTTAGGGTGGAGAATCCAGAAGCATGATGAATCTGCGGTTGAGAATTTCTGCGCTGAAACCGGTGTGAAGAGACATGTTCTCAAGGTTTGGATGCATAACAATAAGCACACTCTCGGCTGGTGGGTTCAAATGAGAAGAGAGTTTAAGAATGGGCCAAAATGGGCCCTACTTGATCTGAAACATTTACAGGAGATGGGCCTTGATAGGGCTTTGGAATTCATCTCGATCAGAGTAACTGTCAGAGTGTGTCAGGGGCCATTAACTGCGTATCCCTCACTCGCAGGCCACCAATTCTTTCTAAAACGAAACCCAAGTGGGGACCAAAACACCGTGGGCCCACACACCCAAAAATAA 1041 0.5456 MEFDEHEDQEEEEMGIPEPPPPPPGYDSFGNSAAKSKSEGGGGGAPAAVTPGRKGGTAVRYRECQKNHAVSIGGHAVDGCCEFLAAGEEGTLEAVICAACNCHRNFHRKEIDGETSPYHQNNPRPQQPPQPPLHHHQYHQFSPYYHRAPPPPSGGYLHLSTPPVSQHRPLALPPAASGGGGGGFYKEEEDMSNPSSSGGGGGSGSGSKKRFRTKFTQEQKDKMLAFAEQLGWRIQKHDESAVENFCAETGVKRHVLKVWMHNNKHTLGWWVQMRREFKNGPKWALLDLKHLQEMGLDRALEFISIRVTVRVCQGPLTAYPSLAGHQFFLKRNPSGDQNTVGPHTQK 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120838g00041 346 FunFam Zinc-finger homeodomain protein 2 197 269 - -
Stsc120838g00041 346 MobiDBLite consensus disorder prediction 113 210 - -
Stsc120838g00041 346 MobiDBLite consensus disorder prediction 1 15 - -
Stsc120838g00041 346 NCBIfam homeobox domain, ZF-HD class 208 264 IPR006455 -
Stsc120838g00041 346 SUPERFAMILY Homeodomain-like 195 267 IPR009057 -
Stsc120838g00041 346 MobiDBLite consensus disorder prediction 1 54 - -
Stsc120838g00041 346 Gene3D - 193 268 - -
Stsc120838g00041 346 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 61 110 IPR006456 -
Stsc120838g00041 346 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 38 267 - -
Stsc120838g00041 346 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 60 111 IPR006456 -
Stsc120838g00041 346 Pfam ZF-HD protein dimerisation region 59 111 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120838g00041 Stsc-Chr120838 287774 294064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120838g00041 7 275 ZF-HD Transcription Factor Family AT4G24660 51.661 2.98e-69 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Stsc120838g00041 ZF-HD_dimer 5.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120838g00041 - - pvu:PHAVU_009G037900g 340.887