Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120838g00035 ATGTCTTCCAATTTGCACAGAGGAGGTTCCGCTTACGGTGATGCCGCCCCTTTCCGATCCAGAGAGGGGCTCAGCACGAGATCCGCTGCTTCCTCCGATGAAATCCAATTGCGCATTGATCCCATGGACATGGAGTTGGACAACGAAATCAACGGTCTTCGCGGCCAAGTCAAAAAGTTGAGAAATGTTGCTCAAGAGATAGGTACAGAAGTAAAGCAGCAGAAGGATTTTTTGGAAGAGCTGCAAACAATCATGTCGAATGCTCAAGCCGGGGTTAAGAATAATATAAGAAGATTGAACAAGAGCATCGTTCGAAGTGGTTCAAACCATGTTGTTCATGTGGTTGTTTTTGCATTAATTTGTTTCTTTGTAGTGTACTTTTGGTCAAAGATGTTTAGAAAATGA 405 0.4346 MSSNLHRGGSAYGDAAPFRSREGLSTRSAASSDEIQLRIDPMDMELDNEINGLRGQVKKLRNVAQEIGTEVKQQKDFLEELQTIMSNAQAGVKNNIRRLNKSIVRSGSNHVVHVVVFALICFFVVYFWSKMFRK 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120838g00035 134 CDD SNARE_Qc 45 101 - -
Stsc120838g00035 134 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 40 102 IPR000727 -
Stsc120838g00035 134 SMART tSNARE_6 35 102 IPR000727 -
Stsc120838g00035 134 Gene3D - 47 109 - -
Stsc120838g00035 134 MobiDBLite consensus disorder prediction 1 34 - -
Stsc120838g00035 134 FunFam Bet1-like protein At4g14600 46 104 - -
Stsc120838g00035 134 PANTHER GOLGI SNARE BET1-RELATED 19 130 - -
Stsc120838g00035 134 SUPERFAMILY SNARE fusion complex 33 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120838g00035 Stsc-Chr120838 255336 257260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120838g00035 25 131 SNARE and Associated Proteins AT3G45280 27.523 1.52e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120838g00035 K08505 - cpap:110816711 201.06