Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120838g00021 ATGTCAATCATCCGAATCCAATTAACACGCCACCATGGCCTTCTCGCCGCGATCCTGCTCCTCCTCCACCTCCTCCTTCCGCCGCCGCAAACCGCCGCGCAGAGTGCTAACACGATGCCGCCTCCGTCGCCGGACGCGCTCACCAAGGTGAAATTCGACAAGTCCATGGCCATCGTCTTGGTGATCCTCGTCATCGTGTTCTTCGCACTCGGCTTCCTCTCTGTGTACACTCGCCAGTGCGCGGAGCGTCGGATGAGGGCGAGGTTCGACCTCACGTTCCCCCTCGGCGGAAGCCACCGCCGGCAGCGTGGCTNNNNNNNNNNCCCGACGTTTGTTTACTCCGCCGTGAAGGCACAGAAAATTGGTCGCGCCACGCTAGAATGCGCCGTGTGCCTCAACGAGTTCAACGACGACGAAACGCTGCGTTTGATCCCAAAGTGTAGCCACGTGTTTCACCCTGATTGCATTGACGCATGGCTCGCTAACCACTCTACCTGCCCCGTTTGCCGCGCCAACCTCTTCCCAACCCCCTCCGACAGCAATAATAACGATAACGGCACCTTCGTTGCCGTTCAGATCCCTGATCCCGAATCCAACGGTTCACAGGGATCCGAAATTGCACAGATTAATAACGGTAACGATAACGGAGGAGGAGGGACGGCAACGGCAATGGTAATGGAGTCTCCGAAGATGGAAAATTCAGTTAACCAGAGGAGTACGCCGTTACGGTCAAGGTCAACAGGGTTTAGGATTGGGAGTTTGTTTCCAAGGTCGCACTCGACGGGTCACTCGCTGGTCCAACCGGGGGAGAGCTTGGAGCGGTTTACGCTGAGGCTGCCGGATGAGGTGCGGAACCGGCTGCTTATCAGTTCGACGCCGAGACGAACGATGAGTCCCGGCGGCGCCACGTTCGCAAGGGAGAGCAGCGTGAGGAGAGGGTTTAGGACAAGGAGTGTGGGTCCCGGGAGGAGCTACGTGCAGTATGAACGGTTTGGGCGGCGAGGGTTCAATTGGACACCGGCGTTTTTTAGTCGGGGCAATTCAAGCAGGTCGCCGGTGAACGTTTTGCCTGCGGAGAGGAACATGGAAGTGGCGGTGGAAACTGGTGAACGGTCTTCGGATCGGTTATTTGGAGGTGGTGAGAGTTAG 1149 0.5727 MSIIRIQLTRHHGLLAAILLLLHLLLPPPQTAAQSANTMPPPSPDALTKVKFDKSMAIVLVILVIVFFALGFLSVYTRQCAERRMRARFDLTFPLGGSHRRQRGXXXXPTFVYSAVKAQKIGRATLECAVCLNEFNDDETLRLIPKCSHVFHPDCIDAWLANHSTCPVCRANLFPTPSDSNNNDNGTFVAVQIPDPESNGSQGSEIAQINNGNDNGGGGTATAMVMESPKMENSVNQRSTPLRSRSTGFRIGSLFPRSHSTGHSLVQPGESLERFTLRLPDEVRNRLLISSTPRRTMSPGGATFARESSVRRGFRTRSVGPGRSYVQYERFGRRGFNWTPAFFSRGNSSRSPVNVLPAERNMEVAVETGERSSDRLFGGGES 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120838g00021 382 SMART ring_2 128 169 IPR001841 -
Stsc120838g00021 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 176 IPR013083 -
Stsc120838g00021 382 PANTHER RING FINGER DOMAIN-CONTAINING 30 180 - -
Stsc120838g00021 382 Pfam Ring finger domain 127 170 IPR001841 -
Stsc120838g00021 382 SUPERFAMILY RING/U-box 125 178 - -
Stsc120838g00021 382 MobiDBLite consensus disorder prediction 183 223 - -
Stsc120838g00021 382 CDD RING-H2_EL5-like 127 170 - -
Stsc120838g00021 382 FunFam E3 ubiquitin-protein ligase ATL6 100 176 - -
Stsc120838g00021 382 MobiDBLite consensus disorder prediction 183 218 - -
Stsc120838g00021 382 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120838g00021 Stsc-Chr120838 181854 183672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120838g00021 12 345 Rapid Response to Elicitors AT3G05200 36.857 2.08e-54 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120838g00021 K10664 - gmx:100815982 333.569