Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120838g00020 ATGGCACTAGAAGCAGTGGTTTTTCCACAAGATCCCTTATTCTCCTCCTCCTCCTCCTCCTATCCCACCACCACCAAGGATTACTTCTACTCTTCTTGGAATCACCACCATGATTATCAAGAGAAACTTCTCATCGGAATTATAAACAACAATAACAACAACATCAACATCTTTCAACACCAGAGTACTCTCCATCACCACCATCATGCAACTACTACTACTACTACTAATAATAATAATTCCGATTCTTATTGTAATAACAATTCTCCTCCTTCCATCGACCAGTGGGATCATCATTCTCACTACTCTTCTACTTCCTCCCCTGACTGCTGCGCTGCCACCACCACCGTTGATCAACCTTCTTCTTTCCCTTCCACCACCACCACAGGCCGCCGCAAACGCCGTCGCACCAAGACCACGAAGAACAAGGAGGAGATCGAGAACCAGAGGATGACTCACATTGCAGTTGAACGCAACCGTCGCAAGCAGATGAACGACTACCTCGCCGTCCTTCGTTCTTTGATGCCTCCTTCTTATGTTCAAAGGGGTGACCAAGCGTCTATTATTGGAGGCGCCATTAACTTTGTGAAGGAGCTAGAGCAGCTTTTGCAGTCCATGGAGGGCCAAAAGAAACCCAACCGCGACACTACGGGTGGCGCCGCCGCCATGAATAGTAGCCGCAAGCCATCATCATCACCACCTTTTGCGGAGTTCTTCACGTTCCCTCAGTACACAACGCGTGCACATAACCAACAACAGGGCAACAACAACACAACGACGATGGCAGCGGAGCAGCAACAGAAACAGTGGTCGGCGGCGGACATAGAAGTGACAATGGTGGACACCCATGCGAACCTTAAGATTCTATCAAAGAAACGAAATGGGCAGCTTATGAAGATGGTGGTTGGTCTCCAATCTCTAAGATTCACCATCCTCCACCTTAATGTTACCACTTTCCATGATTTGGTCCTTTACTCGGTCAGCGTAAAGGTAGAGGATGGGTGTGAGCTGAATACGGTGGATGAAATAGCTGCTGCTGTGAATCAATTAATCAGCGTAGTTCAAGAAGAGGCATCATCATCTTTCCACTCAATTAATTAG 1101 0.4741 MALEAVVFPQDPLFSSSSSSYPTTTKDYFYSSWNHHHDYQEKLLIGIINNNNNNINIFQHQSTLHHHHHATTTTTTNNNNSDSYCNNNSPPSIDQWDHHSHYSSTSSPDCCAATTTVDQPSSFPSTTTTGRRKRRRTKTTKNKEEIENQRMTHIAVERNRRKQMNDYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELEQLLQSMEGQKKPNRDTTGGAAAMNSSRKPSSSPPFAEFFTFPQYTTRAHNQQQGNNNTTTMAAEQQQKQWSAADIEVTMVDTHANLKILSKKRNGQLMKMVVGLQSLRFTILHLNVTTFHDLVLYSVSVKVEDGCELNTVDEIAAAVNQLISVVQEEASSSFHSIN 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120838g00020 366 Gene3D - 132 215 IPR036638 GO:0046983
Stsc120838g00020 366 MobiDBLite consensus disorder prediction 68 91 - -
Stsc120838g00020 366 FunFam Basic helix-loop-helix transcription factor 139 214 - -
Stsc120838g00020 366 PANTHER MAX DIMERIZATION, MAD 59 359 - -
Stsc120838g00020 366 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 148 199 IPR011598 GO:0046983
Stsc120838g00020 366 MobiDBLite consensus disorder prediction 107 128 - -
Stsc120838g00020 366 MobiDBLite consensus disorder prediction 107 143 - -
Stsc120838g00020 366 MobiDBLite consensus disorder prediction 207 235 - -
Stsc120838g00020 366 Pfam Helix-loop-helix DNA-binding domain 149 200 IPR011598 GO:0046983
Stsc120838g00020 366 CDD bHLH_AtFAMA_like 151 211 - -
Stsc120838g00020 366 SMART finulus 154 205 IPR011598 GO:0046983
Stsc120838g00020 366 MobiDBLite consensus disorder prediction 66 91 - -
Stsc120838g00020 366 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 148 211 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120838g00020 Stsc-Chr120838 156793 159209 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120838g00020 1 331 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 48.338 9.82e-82 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc120838g00020 HLH 4.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120838g00020 - - gmx:100789380 323.168