Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120838g00019 ATGGCACTAGAAGCAGTGGTTTTTCCACAAGATCCCTTATTCTCCTCCTCCTCCTCCTCCTATCCCACCACCACCAAGGATTACTTCTACTCTTCTTGGAATCACCACCATGATTATCAAGAGAAACTTCTCATCGGAATTATAAACAACAATAACAACAACATCAACATCTTTCAACACCAGAGTACTCTCCATCACCACCATCATGCAACTACTACTACTACTACTAATAATAATAATTCCGATTCTTATTGTAATAACAATTCTCCTCCTTCCATCGACCAGTGGGATCATCATTCTCACTACTCTTCTACTTCCTCCCCTGACTGCTGCGCTGCCACCACCACCGTTGATCAACCTTCTTCTTTCCCTTCCACCACCACCACAGGCCGCCGCAAACGCCGTCGCACCAAGACCACGAAGAACAAGGAGGAGATCGAGAACCAGAGGATGACTCACATTGCAGTTGAACGCAACCGTCGCAAGCAGATGAACGACTACCTCGCCGTCCTTCGTTCTTTGATGCCTCCTTCTTATGTTCAAAGGGGTGACCAAGCGTCTATTATTGGAGGCGCCATTAACTTTGTGAAGGAGCTAGAGCAGCTTTTGCAGTCCATGGAGGGCCAAAAGAAACCCAACCGCGACACTACGGGTGGCGCCGCCGCCATGAATAGTAGCCGCAAGCCATCATCATCACCACCTTTTGCGGAGTTCTTCACGTTCCCTCAGTACACAACGCGTGCACATAACCAACAACAGGGCAACAACAACACAACGACGATGGCAGCGGAGCAGCAACAGAAACAGTGGTCGGCGGCGGACATAGAAGTGACAATGGTGGACACCCATGCGAACCTTAAGATTCTATCAAAGAAACGAAATGGGCAGCTTATGAAGATGGTGGTTGGTCTCCAATCTCTAAGATTCACCATCCTCCACCTTAATGTTACCACTTTCCATGATTTGGTCCTTTACTCGGTCAGCGTAAAGGTAGAGGATGGGTGTGAGCTGAATACGGTGGATGAAATAGCTGCTGCTGTGAATCAATTAATCAGCGTAGTTCAAGAAGAGAAGGACACGCATTTGGAGAAGTTATATTATTGGTTGGGTGCCTTTTATTTTGGGACAGACTTTTATTTACTTTACTGTATTAGTCACGAGCACGCGGCTATTAGAGTATTTTTCATTTCATTTTATATAGCTAAGGTATGTATGCAATTATAA 1224 0.4592 MALEAVVFPQDPLFSSSSSSYPTTTKDYFYSSWNHHHDYQEKLLIGIINNNNNNINIFQHQSTLHHHHHATTTTTTNNNNSDSYCNNNSPPSIDQWDHHSHYSSTSSPDCCAATTTVDQPSSFPSTTTTGRRKRRRTKTTKNKEEIENQRMTHIAVERNRRKQMNDYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELEQLLQSMEGQKKPNRDTTGGAAAMNSSRKPSSSPPFAEFFTFPQYTTRAHNQQQGNNNTTTMAAEQQQKQWSAADIEVTMVDTHANLKILSKKRNGQLMKMVVGLQSLRFTILHLNVTTFHDLVLYSVSVKVEDGCELNTVDEIAAAVNQLISVVQEEKDTHLEKLYYWLGAFYFGTDFYLLYCISHEHAAIRVFFISFYIAKVCMQL 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120838g00019 407 MobiDBLite consensus disorder prediction 68 91 - -
Stsc120838g00019 407 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 148 211 IPR036638 GO:0046983
Stsc120838g00019 407 PANTHER MAX DIMERIZATION, MAD 59 358 - -
Stsc120838g00019 407 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 148 199 IPR011598 GO:0046983
Stsc120838g00019 407 FunFam Basic helix-loop-helix transcription factor 139 214 - -
Stsc120838g00019 407 MobiDBLite consensus disorder prediction 107 128 - -
Stsc120838g00019 407 MobiDBLite consensus disorder prediction 107 143 - -
Stsc120838g00019 407 Pfam Helix-loop-helix DNA-binding domain 149 200 IPR011598 GO:0046983
Stsc120838g00019 407 MobiDBLite consensus disorder prediction 207 235 - -
Stsc120838g00019 407 Gene3D - 132 215 IPR036638 GO:0046983
Stsc120838g00019 407 CDD bHLH_AtFAMA_like 151 211 - -
Stsc120838g00019 407 SMART finulus 154 205 IPR011598 GO:0046983
Stsc120838g00019 407 MobiDBLite consensus disorder prediction 66 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120838g00019 Stsc-Chr120838 156230 159209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120838g00019 1 331 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 48.338 1.40e-80 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc120838g00019 HLH 4.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120838g00019 - - gmx:100789380 323.168