Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120838g00016 ATGGCGCTACTGCGTAGTGTTTGCGTTCCTTCAACTACTCATGTTTCTACACACAACCAATCTCTCTCATTATCCCTCAACATTCACACCCATTCCATCACCACCATCAATCCACTCTCTTCCTTTCAACCCCTCCAATTATCCATTCCCCATCACTCCCCAACACTCCTCACAACCAAACAAAACCCTAATTTCACTCTCAGATTTTCCCAACACGCTCACACTGAGACTGAGACTGAGGCATCACCTACTAGTGTCTCCACCGAAGAACATGCATCGCAAGAGTTCTCTGAGACGAGATTGCTCGCCCAGAACGTGCCATGGACAAGCACCCCTGAAGATATTCGTTCCTTGTTCGAGAGATATGGAAAAGTGCTCCAAGTTGAGTTGTCAATGTATAGCAAGACGAAGAACAGGGGTTTGGCCTTTGTGGAAATGAGTTCACCTGAAGAAGCTCGTGCTGCTCTCCAGAATCTCGAATCGTATGAGTTTGATGGCCGGATATTAAAACTCAATTACGCTCATCCAAAAAAGAAGAAAATTCCACCACCTGTGACACCAAAGCCTTTGACATTTAACTTGTTTGTTGCAAACTTGCACTATGAAGCAAGGTCTAAGGATCTCAAAGAGTTTTTTGATGATGGAAGTGGTAGCGTTGTTTCTGCAGAGGTTATATTTCATGATAACCCTAGAAGGTCATCAGGCTATGGTTTTGTAGGCTTCAAATCCAAGAAACAAGCTGATTCAGCACTTAATGAGTTCCAAGGAAAGATCTTTATGGGAAGACCTTTAAGGGTAGATCGTGGAAGGCGATTTGTTAAAGAACGAGAAAAGGAGAGTGAAAAATCTGAAGACACGTCTACTGAGTTGAATGGTGAAGAAGCTGACAAGGCTGATTGA 900 0.4356 MALLRSVCVPSTTHVSTHNQSLSLSLNIHTHSITTINPLSSFQPLQLSIPHHSPTLLTTKQNPNFTLRFSQHAHTETETEASPTSVSTEEHASQEFSETRLLAQNVPWTSTPEDIRSLFERYGKVLQVELSMYSKTKNRGLAFVEMSSPEEARAALQNLESYEFDGRILKLNYAHPKKKKIPPPVTPKPLTFNLFVANLHYEARSKDLKEFFDDGSGSVVSAEVIFHDNPRRSSGYGFVGFKSKKQADSALNEFQGKIFMGRPLRVDRGRRFVKEREKESEKSEDTSTELNGEEADKAD 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120838g00016 299 Gene3D - 66 182 IPR012677 -
Stsc120838g00016 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 271 IPR000504 GO:0003723
Stsc120838g00016 299 Gene3D - 190 297 IPR012677 -
Stsc120838g00016 299 PANTHER OS02G0815200 PROTEIN 13 268 - -
Stsc120838g00016 299 SMART rrm1_1 193 267 IPR000504 GO:0003723
Stsc120838g00016 299 SMART rrm1_1 100 172 IPR000504 GO:0003723
Stsc120838g00016 299 MobiDBLite consensus disorder prediction 270 299 - -
Stsc120838g00016 299 CDD RRM_SF 194 267 - -
Stsc120838g00016 299 MobiDBLite consensus disorder prediction 73 97 - -
Stsc120838g00016 299 SUPERFAMILY RNA-binding domain, RBD 84 183 IPR035979 GO:0003676
Stsc120838g00016 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 104 169 IPR000504 GO:0003723
Stsc120838g00016 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 265 IPR000504 GO:0003723
Stsc120838g00016 299 SUPERFAMILY RNA-binding domain, RBD 183 273 IPR035979 GO:0003676
Stsc120838g00016 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 176 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120838g00016 Stsc-Chr120838 143542 146025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120838g00016 99 271 Eukaryotic Initiation Factors Gene Family AT3G16380 29.670 2.83e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120838g00016 - - gmx:100790439 320.857