Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120838g00007 ATGGCATGCAATAGCAGTGATAATACTGGGAAGACAATCAGATGCAAAGCTGCAATATGCAGAAAAGCAGGTGAACCTCTTGTTATAGAGGAAATTGAGGTAGACCCACCAAAATCTTGGGAGGTTCGGATCAAGATTCTACTCACTTCTCTCTGTCACTCTGATGTAACCATCTGGAAAATGGACATAGATGTTGTAGCAAAATTTCCAAGAATCTTCGGACATGAAGCTGTAGGAGTTGTGGAGAGCGTAGGGGAGCACGTGGAAGAATTCAAAGAAGGAGACACAGTAGTCCCTGTGTTCCTCGCAAACTGCGAGGAATGCAGGGACTGCAAGAGTCCAAAGAGCAACCTGTGCTCCAAATTCGGGAGGGAGATTTTCAGTGAAATGCCTAGAGATGGAACGAGCAGATTCAAGGATATGAATGGTGAAACACTGTATCATTTCTTGTGTGTTTCGAGCTTTTCAGAGTACACAGTTGTGGATGTCGCACATTTGGTCAATATTAGTCATTATCACCTTCCTCTTGACAAGGCTTGTTTGCTCAGCTGTGGTGTTTCAACAGGGGTGGGAGCTGCATGGAAAGTGGGTGACGTAGAAGAAGGGTCAACAGTGGCTATTTTTGGGCTTGGAGCTGTAGGCCTCGCTGTTGCTGTAGGAGCAAAGCAACGAGGAGCGACAAAGATCATAGGCGTCGATATTAATGCTGAAAAATTTGAAATAGGAAAAAGATTTGGAATTACTGATTTTGTGAATCCCTCCACTTGTGAAGACAAGTCAGTGAGCGAGGTGATTAAGGAAATGACAACTGGAGGTGCTGATTACTGCTTTGAATGCATAGGCTTGGCTTCACTAATGGCGGAGGCTTTTAACAGTAGCCGGAATGGTTGGGGGAAAACGGTGATATTAGGAGTGGAAATGCATGGTTCGCAATTGACATTGAATCCTTATCTCTTGGGGATGGGCAAAACAATCACAGGATCAATGTTTGGAGGTATCAAACCCAAATCTGATATACCCCTCCTTGCTAACAAGTACTTGGATAAAGACCTTAACTTGGAGGGATTCATAACGCACGAGGTGCCCTTCAAGGACATTAACAAAGCTTTTGACTATCTCCAACAAGGAAAGGGCCTCCGCTGCATTATAAAGATGGATCCTTAA 1164 0.4424 MACNSSDNTGKTIRCKAAICRKAGEPLVIEEIEVDPPKSWEVRIKILLTSLCHSDVTIWKMDIDVVAKFPRIFGHEAVGVVESVGEHVEEFKEGDTVVPVFLANCEECRDCKSPKSNLCSKFGREIFSEMPRDGTSRFKDMNGETLYHFLCVSSFSEYTVVDVAHLVNISHYHLPLDKACLLSCGVSTGVGAAWKVGDVEEGSTVAIFGLGAVGLAVAVGAKQRGATKIIGVDINAEKFEIGKRFGITDFVNPSTCEDKSVSEVIKEMTTGGADYCFECIGLASLMAEAFNSSRNGWGKTVILGVEMHGSQLTLNPYLLGMGKTITGSMFGGIKPKSDIPLLANKYLDKDLNLEGFITHEVPFKDINKAFDYLQQGKGLRCIIKMDP 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120838g00007 387 Pfam Alcohol dehydrogenase GroES-like domain 41 168 IPR013154 -
Stsc120838g00007 387 Pfam Zinc-binding dehydrogenase 212 335 IPR013149 -
Stsc120838g00007 387 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 174 348 IPR036291 -
Stsc120838g00007 387 Gene3D - 189 328 - -
Stsc120838g00007 387 Gene3D - 19 381 - -
Stsc120838g00007 387 FunFam Alcohol dehydrogenase 6 18 201 - -
Stsc120838g00007 387 FunFam S-(hydroxymethyl)glutathione dehydrogenase 189 328 - -
Stsc120838g00007 387 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 74 88 IPR002328 GO:0008270|GO:0016491
Stsc120838g00007 387 PANTHER ALCOHOL DEHYDROGENASE 10 383 - -
Stsc120838g00007 387 SUPERFAMILY GroES-like 9 200 IPR011032 -
Stsc120838g00007 387 SUPERFAMILY GroES-like 336 383 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120838g00007 Stsc-Chr120838 87200 90797 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120838g00007 41 375 Monolignol Biosynthesis Gene Families AT2G21730 26.176 3.14e-16 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120838g00007 K00121 - qsu:112023922 573.548