Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120838g00001 TGGGCATTATATCCTCCAGGAAAGGTGCCTTTGGGTGTGACAGTGCATGTTAATGAAGACGATGGTGATGTCAATATTGAGAGTCCGTCATCACTTCAGTGGTGGCTGGACTATTATCCTCTCCTTCCTGATGAAGACAAGCCAATTGAGTGTACACAGCTACCAGGAGAGACAATTTATGTTCCAAGTGGATGGTGGCACTGTGTTTTAAATTTAGAAACAACTATTGCTGTCACTCAGAATTATGTGAATTCAAATAATTTTGAATTTGTGTGTTTGGACATGGCTCCTGGTTATCGTCATAAAGGAGTTTGTCGGGTTGGATGGCTTGCTTTAGATGAAGAAACTTATGAAAATGTTAGACAGAGCACGGCATGTTATTCTGATTGGTCAAGGAAAGAGAAAAGAGCCAAAACTAACAAAGATGTAGATAGTGTAAATTCTGAAAGTACCGTAAATGGTGAATCTAGGACCTATAGTTTATGGAAAGATGGATTTTCCTATGATATAAATTTCTTATCCATGTTTTTGGATAGAGATAGAGACCACTACATTTCCCCTTGGAATGTAGGCAACAGCATTGGTCAACGAGAACTAAGGGAATGGTTATCGAAGCTTTGGATTCAAAAACCACAAATGAGAGAGCTTATATGGAAGGGAGCTTGTATTGCACTAAATGCGGACAAGTGGCTAGAATGCGCTTCAAAAATTTGTTCCACCAACAATTTGCCCCTTCCCAGTGATGATGAAAGGCTTCCAGTTGGCTCGGGTAGCAATCCTGTTTACCTAGTGGGGAACTCTGTTGTTAAGATTTTTGTTGAAGGAGGACTGGAAGCTTCTCTTTATGATTTTGGCACAGAGCTAGAGTTTTACAGCCTACTTCATGAAATCAACTCCCCTCTCAAGAAACATATTCCTAGTATTTTGGCCACTGGGATTATTTATGTTGAAGATGGAACTTTTAACAATTTAACATGGGATGGAAAAGGAGTCCCTGATGTCATTTCAAAGAGCAATCTCATCAAGACAAAATGTGATGTTCATGGTTTCTCATTTGGGATATGGGGAAAGAAACAACTTGAGTATAAGAATGCTGGGATGGAAATGGATGGATCGGATAGTTTAGGAGGTCACTCAAGTATGTGGCCGTATATGGTAATAAAACGATGTGAAGGGAAGATGTTCGCAAATTTGTAA 1197 0.396 WALYPPGKVPLGVTVHVNEDDGDVNIESPSSLQWWLDYYPLLPDEDKPIECTQLPGETIYVPSGWWHCVLNLETTIAVTQNYVNSNNFEFVCLDMAPGYRHKGVCRVGWLALDEETYENVRQSTACYSDWSRKEKRAKTNKDVDSVNSESTVNGESRTYSLWKDGFSYDINFLSMFLDRDRDHYISPWNVGNSIGQRELREWLSKLWIQKPQMRELIWKGACIALNADKWLECASKICSTNNLPLPSDDERLPVGSGSNPVYLVGNSVVKIFVEGGLEASLYDFGTELEFYSLLHEINSPLKKHIPSILATGIIYVEDGTFNNLTWDGKGVPDVISKSNLIKTKCDVHGFSFGIWGKKQLEYKNAGMEMDGSDSLGGHSSMWPYMVIKRCEGKMFANL 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120838g00001 398 ProSiteProfiles JmjC domain profile. 1 99 IPR003347 -
Stsc120838g00001 398 Gene3D Cupin 1 84 - -
Stsc120838g00001 398 SUPERFAMILY Clavaminate synthase-like 1 92 - -
Stsc120838g00001 398 Pfam Cupin-like domain 2 86 IPR041667 -
Stsc120838g00001 398 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 1 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120838g00001 Stsc-Chr120838 205 2209 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120838g00001 1 398 Glycosyltransferase AT1G78280 62.654 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Stsc120838g00001 Cupin_8 2.9e-08 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120838g00001 - - gmx:100792541 698.738