Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120837g00044 ATGATGATGATGATGACGACATGCAGTAGTGGATGCAAGCCCCTATTCATGGAGTCCCTCTTCCATCAAAGAATCACCACAAAGGACAAGGTTGTTGTGGTCATGGGAGCCACCGGCACCGGCAAGTCCAAGCTAGCCATCGACATAGCCACGCACTTCAAACCGGCCGAGATTGTTAACTCAGACAAAATTCAAGTGTTCAAAGGCCTCAACATCACCACAAACAAGGTCACAGAGGAAGAGTCCCGCGGGGTCCCACATCACCTTCTTGGATTCATTGACCCAAACGCTCAAGACATCACAGCCGCACAATTCTCGCAAGAAGCAACGAGAGCCGTTGATTCAATCGTCCAGAGGGACGCTTTACCTATAATTGCCGGTGGCTCTAACTCCTTCATAGACCAGTTGGTAAACCACCATGACCAGTTCCGGTCAAGGTATAAATGCTGCTTTCTCTGGGTGGACGTTTCTCTTCCGGTTCTTCATTCGTCTCTGGAGGAGCGCGTTGATCGGATGATCGAGTGTGGTCAAGTCAACGAAGTTCGCGAATTCTTTGACCCTTCCGGGGCCTACTCCAGGGGGATTCGGAGGGCCATTGGAGTCCCTGAGTTTCACGAGTTTCTGAGAGCGGAGTCCATGGGAGCAGACGAGGAAACAAAGAAGAGGCTTCTAGAGGACGCCATTGCCACCATCAAGGTCAACAACTGCAACCTCGCGAACCGCCAGTTACACAAGATTCAGCGCCTGTACGGAATGTGGAAGAGGAGCATGCACCGCCTCGACGCCACGGAGGCTTTTCTTAACAAAGAAGAAGGCGTTTGGGAGGATCACGTGGTGAGTAAGGCTAGAAGGATCGTGCAGAGGTTCTTGTACGACGAAGCTCACCATCAACATGTTCCGCCGCCAGCACCCGCCATGGCCGCCGTAACACATTAA 936 0.5214 MMMMMTTCSSGCKPLFMESLFHQRITTKDKVVVVMGATGTGKSKLAIDIATHFKPAEIVNSDKIQVFKGLNITTNKVTEEESRGVPHHLLGFIDPNAQDITAAQFSQEATRAVDSIVQRDALPIIAGGSNSFIDQLVNHHDQFRSRYKCCFLWVDVSLPVLHSSLEERVDRMIECGQVNEVREFFDPSGAYSRGIRRAIGVPEFHEFLRAESMGADEETKKRLLEDAIATIKVNNCNLANRQLHKIQRLYGMWKRSMHRLDATEAFLNKEEGVWEDHVVSKARRIVQRFLYDEAHHQHVPPPAPAMAAVTH 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120837g00044 311 Gene3D - 28 290 IPR027417 -
Stsc120837g00044 311 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 187 IPR027417 -
Stsc120837g00044 311 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 28 290 IPR039657 -
Stsc120837g00044 311 FunFam Adenylate isopentenyltransferase 5, chloroplastic 158 257 - -
Stsc120837g00044 311 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 158 257 - -
Stsc120837g00044 311 Pfam IPP transferase 65 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120837g00044 Stsc-Chr120837 240548 242024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120837g00044 145 306 C2H2 Transcription Factor Family AT2G27760 30.319 7.30e-21 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120837g00044 K10760 - gmx:100812928 384.03