Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120837g00038 ATGAGGAAGAAACTTGATACACGTTTCCCTGCTGCTAGGATTAAGAAAATCATGCAAGCTGATGAAGATGTAGGGAAGATTGCTATGGCTGTGCCTCTTCTAGTTTATTTATGTAACAGGACATATGAGATAACTCTTAGGAGAGGAGCAAAGACCATGACTGCTTTGCATTTAAAGCATTGTGTGCAGACATTTAACGTCTTCGATTTTCTGAAAGATATTCTCCACAAGGTTCCGGATTTAGGTGGTTCTGGCGTGTCATGTGATGATCGTTCTGTCACTAAGAGGAGGAAAGTCGCAGAAGGTGATGATAATGACAGCGACGAGGAGCAAAAGAGAAATAAGATGCTAGAGGCTGCATATACTAGTGGCCGAGGCAGGGGTAGAGGCAGAGGTAGAGGCCGTGGCCGAGGACATAGAACGGCAGACCATGATCATGATATAATTTCACCTGTCAAATTTGAAGAAGAGTCTGATGTATTGAAGCAAAATGGCAAGCACACACATAGCAGTGAAAGCCCGGAAAATGTTTCGGAACATGAAGAAGTTAAGCCGAGTTTTTCGGTTAGCAAGCCAGCTGAATCGTGCGTTCGGAATATCGACTTGAATATGGCTCCAGATGATGAGGACATGGATTCATTCGACATGCCAGGTCCAGTTCCGGTAATGGATTCATCAGACACACTAACTCATGTCCCTGCTACCTCATCTGCGAAACAAATGGTAGAAGAAGAGAAGCATGAGGAATACCCCGGATGGTCCTTTTCGGATATGGCAGAGATGAGCATCGACGCCATTCAACTAGCGAACATAAACGGGAAGATAGATGAAGACGATGAAGATTACGACGAAGAAACATAG 861 0.4437 MRKKLDTRFPAARIKKIMQADEDVGKIAMAVPLLVYLCNRTYEITLRRGAKTMTALHLKHCVQTFNVFDFLKDILHKVPDLGGSGVSCDDRSVTKRRKVAEGDDNDSDEEQKRNKMLEAAYTSGRGRGRGRGRGRGRGHRTADHDHDIISPVKFEEESDVLKQNGKHTHSSESPENVSEHEEVKPSFSVSKPAESCVRNIDLNMAPDDEDMDSFDMPGPVPVMDSSDTLTHVPATSSAKQMVEEEKHEEYPGWSFSDMAEMSIDAIQLANINGKIDEDDEDYDEET 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120837g00038 286 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 62 IPR003958 -
Stsc120837g00038 286 MobiDBLite consensus disorder prediction 90 116 - -
Stsc120837g00038 286 MobiDBLite consensus disorder prediction 138 187 - -
Stsc120837g00038 286 Gene3D Histone, subunit A 1 77 IPR009072 GO:0046982
Stsc120837g00038 286 SUPERFAMILY Histone-fold 4 93 IPR009072 GO:0046982
Stsc120837g00038 286 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 113 - -
Stsc120837g00038 286 MobiDBLite consensus disorder prediction 85 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120837g00038 Stsc-Chr120837 208255 210649 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120837g00038 1 118 CCAAT-HAP5 Transcription Factor Family AT3G12480 63.910 1.80e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Stsc120837g00038 CBFD_NFYB_HMF 1.9e-08 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120837g00038 K21752 - gmx:100814800 313.153