Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120837g00034 ATGTCAAGTGGAGCAACGCACTGGTGTTACGAGTGCAGGCAACCGATCGTGCTCGGAGGGAGAGATGCTGTTTGTCCCTACTGTGATGGAGGGTTCGTGCAAGAACTTAACGAATTGCAAGGATTTGCACCTCAACATTCCTTTCCATCATCACAGATGGGGGAGTTCCATCAGATGCCTGATTTTTTCGATGCTTTGCATGCTTTTATGGGGAGGAGGGGTCCTGATCCAAGGTTTGGTTTTATAGATGCTGTGGATAATTTCATGAGGCAGAGAATGGCTGGAAGGCACCCCAATTTTGATGTTAGGGGGAGGTCTGGTCCTTCTCCTGCCCCGGGTGCTGATCAGAGTTGGGGCGTTGTTAGTTCTGGTCCTTATTTGATATTTCACGGCCAAGTTCCTGGATTCACCTTGGCTAATGGCAGTCCAAGAGGTGGTCCGAGGCGTGTAGATTTCGGTGACTACTTTATGGGCCCTGGACTTGAAGAACTTATTGAGCAACTCACTATGAATGAACGGCGTGGTCCACCCCCAGCTGCACGCTCTTCAATTGACGCCATGCCTACTATTAAGATCACGAGTGCGCATCTTCGCCAAGATTCACACTGTCCAGTGTGTAAAGACAAATTTGAACTGGGATCTGAAGCCAGAGAGATGCCATGTAACCATATCTACCACTCTGATTGTATTGTTCCTTGGTTGGTTCAGCATAACTCGTGTCCTGTTTGCCGTGTTGAACTTCCACCTCAAGGACATGTTAGTTCTCGTGGTAGTCGGAGTGGGGGTGGAAGGAATGCCAACACCAGTAGTGGTGAGAGCGATAGCAGCTCCGGGAGCAGGGAGAGTAGCCATCAGAGCCATGGAAGGAGAAATCCTCTATCATTTCTGTGGCCGTTCCGTTCTTCCAGCTCAAACAATAATCATGGAAGCTTCTTCTAG 939 0.492 MSSGATHWCYECRQPIVLGGRDAVCPYCDGGFVQELNELQGFAPQHSFPSSQMGEFHQMPDFFDALHAFMGRRGPDPRFGFIDAVDNFMRQRMAGRHPNFDVRGRSGPSPAPGADQSWGVVSSGPYLIFHGQVPGFTLANGSPRGGPRRVDFGDYFMGPGLEELIEQLTMNERRGPPPAARSSIDAMPTIKITSAHLRQDSHCPVCKDKFELGSEAREMPCNHIYHSDCIVPWLVQHNSCPVCRVELPPQGHVSSRGSRSGGGRNANTSSGESDSSSGSRESSHQSHGRRNPLSFLWPFRSSSSNNNHGSFF 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120837g00034 312 MobiDBLite consensus disorder prediction 253 282 - -
Stsc120837g00034 312 MobiDBLite consensus disorder prediction 251 291 - -
Stsc120837g00034 312 Pfam Ring finger domain 202 244 IPR001841 -
Stsc120837g00034 312 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 140 248 - -
Stsc120837g00034 312 FunFam E3 ubiquitin-protein ligase RING1-like 166 250 - -
Stsc120837g00034 312 CDD RING-H2_RNF126-like 203 244 - -
Stsc120837g00034 312 SUPERFAMILY RING/U-box 183 250 - -
Stsc120837g00034 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 166 250 IPR013083 -
Stsc120837g00034 312 SMART ring_2 203 243 IPR001841 -
Stsc120837g00034 312 Pfam zinc-ribbon 6 36 IPR039525 GO:0061630
Stsc120837g00034 312 ProSiteProfiles Zinc finger RING-type profile. 203 244 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120837g00034 Stsc-Chr120837 188907 190426 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120837g00034 147 260 C3H Transcription Factor Family AT5G01980 42.241 1.36e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120837g00034 K11982 - gmx:100813674 506.908